BtaINT0157556 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27593898-27594427:+
Coord C1 exon
chr28:27593898-27594066
Coord A exon
chr28:27594067-27594193
Coord C2 exon
chr28:27594194-27594427
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCTCTCCGTGACCCTACAGGAA
3' ss Score
10.58
Exon sequences
Seq C1 exon
CCCGCTTTCAGAAGGGACCCAGACAGTATTGAGCCCCGCAGTGACCTGCGGGCCCACGGGCCTCCTGCTATGCCGCCCCGTCATCCTCACGGTGCCCCACTGCGCAGAAGTCAGTGCCGGCAACTGGATTTTCCAGCTCAAGACCCAGGCCCACCAGGGCCACTGGGAG
Seq A exon
GTGAGGAGGCAAGGCTGGGGGACCTTGGGATCTGAAAGCCCCTTTCATCCTGGCCCAACCTGGATGGACCCCCTCCAGGGCCTTGGCTGACCCGCCACTTCACCGCCCCCTCTCCGTGACCCTACAG
Seq C2 exon
GAAGTGGTGACCCTGGATGAGGAGACCCTGAATACCCCTTGCTACTGCCAGCTGGAGGCCAGGTCCTGCCACATCCTGCTGGACCAGCTGGGCACCTACGTGTTCACGGGTGAGTCTTACTCCCGCTCGGCAGTCAAGCGGCTCCAGCTGGCCATCTTTGCCCCGGCCCTCTGCACCTCGCTGGAGTACAGCCTCAGAGTCTACTGCCTAGAGGACACGCCTGTAGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(13.3=26.3)
A:
NA
C2:
PF094705=Telethonin=FE(68.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCAGCTCAAGACCCAGG
R:
AGGCAGTAGACTCTGAGGCTG
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]