RnoINT0160601 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30349381-30349874:-
Coord C1 exon
chr20:30349706-30349874
Coord A exon
chr20:30349615-30349705
Coord C2 exon
chr20:30349381-30349614
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTCCTCTTTGTCCCCCGCAGGAG
3' ss Score
11.84
Exon sequences
Seq C1 exon
CCCACTTTCAGAAGGTTCCCAGACAGTATTGAGCCCCTCGGTGACCTGCGGGCCCACGGGCCTCCTCCTGTGCCGCCCTGTTGTCCTCACTGTGCCCCACTGTGCTGAAGTCATTGCCGGAGACTGGATCTTCCAGCTCAAGACCCAGGCCCATCAGGGCCACTGGGAG
Seq A exon
GTGAGGCGCCGGGCGTGGTGACTGACTCTCAGAACTGCCCCCAATTGACTAATCTCAACCCCGATGACAACCTCCTCTTTGTCCCCCGCAG
Seq C2 exon
GAGGTGGTGACTTTGGATGAGGAGACTCTGAACACCCCCTGCTACTGCCAGCTAGAGGCTAAATCCTGCCACATCCTGTTGGACCAGCTGGGTACCTACGTGTTCACGGGCGAGTCCTACTCCCGCTCCGCAGTCAAGCGGCTCCAGCTAGCCATCTTCGCCCCAGCCCTCTGCACCTCCCTGGAGTATAGTCTCAGGGTCTACTGTCTGGAGGACACTCCTGCAGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(15.5=31.6)
A:
NA
C2:
PF094705=Telethonin=FE(66.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCATTGCCGGAGACTGG
R:
TGAACACGTAGGTACCCAGCT
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]