GgaINT0042393 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11357320-11357833:+
Coord C1 exon
chr6:11357320-11357488
Coord A exon
chr6:11357489-11357599
Coord C2 exon
chr6:11357600-11357833
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GTTTCCATCTCTCCTTGTAGGAA
3' ss Score
11.59
Exon sequences
Seq C1 exon
CTTGCCCTCTGAGGGCACTCAGACAGTGCTGAGCCCGGCGGTGACCTGTGGACCCACTGGCCTGCTGCTGTGCCGCCCTGTTGTCCTCACCATTCCCCACTGTGCAGATGTCAGCTCCTCGGACTGGATCTTCCAGCTGAAAACACAGTCCCACCAGGGGAACTGGGAG
Seq A exon
GTAAGGTGTGAGCCCAGCCTTGCGGCCAGCCAAGCCCCCAAGTGCTGTGGGACACAACATTTCCCAAGCAAAGGGCTGACCCTAAGCTTTTGTTTCCATCTCTCCTTGTAG
Seq C2 exon
GAAGTGGTGACCCTGGATGAGGAGACCCTCAATACCCCCTGCTACTGCCAGCTGGAAGCCAAGTCCTGCCATGTCCTGCTAGACCAGCTGGGCACCTACGTTTTTGTGGGCGAGTCCTACTCCAGGTCAGCCATCAAGAGGCTCCAGTTGGCCATCTTTGCCCCTGCCATCTGCACCTCCCTGGAGTACAGCCTCAAGGTCTACTGCCTGGAGGATACTCCAGATGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCTCGGACTGGATCTTC
R:
GTACTCCAGGGAGGTGCAGAT
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]