MmuINT0170585 @ mm9
Intron Retention
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 homolog B (C. elegans) [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60234926-60235405:-
Coord C1 exon
chr10:60235237-60235405
Coord A exon
chr10:60235160-60235236
Coord C2 exon
chr10:60234926-60235159
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GTCCTCTTCGTCCCCCATAGGAG
3' ss Score
10.38
Exon sequences
Seq C1 exon
CCCACTTTCAGAAGGTTCCCAGACAGTATTGAGCCCCTCGGTGACCTGTGGGCCCACAGGCCTACTCCTGTGCCGCCCTGTCGTCCTCACCGTGCCCCACTGTGCTGAAGTCATCGCTGGAGACTGGATCTTTCAGCTCAAGACCCAGGCCCATCAGGGCCACTGGGAG
Seq A exon
GTGAGAAGCCGGGTGTGGTGACTCTCAAAACGGCATGATCCCAGCCCAGGTGACAACGTCCTCTTCGTCCCCCATAG
Seq C2 exon
GAGGTGGTGACCTTGGATGAGGAGACCCTCAACACACCCTGCTACTGCCAGCTGGAGGCTAAGTCCTGCCACATCCTGCTGGACCAGCTGGGTACCTACGTATTCATGGGCGAGTCCTACTCTCGCTCTGCAGTCAAGCGGCTCCAGCTGGCCATCTTCGCCCCAGCCCTCTGCACCTCCCTGGAGTATAGCCTCAGGGTCTACTGTCTGGAGGACACACCTGTAGCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099-Unc5b:NM_029770:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PD(50.5=91.2),PF094705=Telethonin=PU(15.5=31.6)
A:
NA
C2:
PF094705=Telethonin=FE(66.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAGCTCAAGACCCAGGC
R:
TGCAGAGCGAGAGTAGGACTC
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: