BtaINT0157564 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27587394-27588454:+
Coord C1 exon
chr28:27587394-27587574
Coord A exon
chr28:27587575-27588286
Coord C2 exon
chr28:27588287-27588454
Length
712 bp
Sequences
Splice sites
5' ss Seq
ACGGTGTGG
5' ss Score
4.66
3' ss Seq
GACACCTACTACCCTCGCAGTGA
3' ss Score
5.57
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAGGACGTCATCGACCCCACCCAGGACACCAACTTCCTGCTCACCATCGACCACAACCTCATCATCCGCCAGGCCCGCCTGTCGGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCAAAGCGCCGCAGCACCACGGCCACCGTCATTGTCTACG
Seq A exon
GTGTGGCCCAGAGTGGGCGGTGGGGAGGGGACACGTGGTGGAGGTGGGCGGGGACCTGGGGCGGTATAGCCCACCTGACCCTGTTCTACCCAAAAGCCAGCACCTGGTGAACAGGTGGGGAGGAGGAGGCCCAAGAGAGGAGAGGTAGCTTCTCCAAGGTCACACAGCAAATTTAGTGGTGAGGCCAGGCACTCCTGGGCCCCCAGCCAGGAGCACTCGCCCCTTCTCAAGCCCTTTGCTTGTCCCTGAAGAAGACCCAGTTCTCTGGGAGTCGGGGCTGAGGCAGGGCCCACTTGGGATCCCCATCCCCAAGCGTATTATTCTAGCAGAGTTCGGGACTGCTGCTTGGGCCGCTCAGCAATTCCTTGCTGTCCCCGTGGGTGGGAGGGCGGAGCCATGGCTGAGATGAGTGTTGTAGCTCCAGTTATAGACCTCCCCCTATTCCTCACGGGGAGACCCAGGGTGCCAGCCCTCTCTGGACCTCTACTTGCCATTGTACAGAAAGGCAGGGAGTCATTGGTTGCCATCTGGTGCTGAATGCAACCCAGGTCTGCCCTCCGGTGTCTGAGTCCCCAGCCTTGATGGCAGAGGGGGTCCAACTCCAGAGGGCCAGTCCCCAGCAGAGGGGCCTCCTCAGGGCTGTGGGATGGGGCCTGGGGGCCCCACAGGGTGAAGAGCCAGGCCAGCTGGGTGACACCTACTACCCTCGCAG
Seq C2 exon
TGAATGGTGGCTGGTCCAGCTGGGCAGAGTGGTCGCCCTGCTCTAACCGCTGTGGCCGCGGCTGGCAGAAGCGCACGCGGACCTGCACCAACCCTGCCCCGCTCAACGGAGGTGCCTTCTGCGAGGGCCAGGCCTTCCAGAAGACTGCCTGCACCACCGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=WD(100=89.5),PF150281=PTCRA=PU(19.0=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAATGAGGACGTCATCGA
R:
GTGCAGGCAGTCTTCTGGAAG
Band lengths:
326-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]