RnoINT0160609 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30355210-30356395:-
Coord C1 exon
chr20:30356215-30356395
Coord A exon
chr20:30355378-30356214
Coord C2 exon
chr20:30355210-30355377
Length
837 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGG
5' ss Score
5.75
3' ss Seq
GTGATGGCCCATCCCTGTAGTGA
3' ss Score
5.01
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAAGATGTCATCGATCCCGCTCAGGACACTAACTTCCTGCTCACCATTGACCACAACCTCATCATCCGCCAGGCGCGCCTCTCAGACACAGCCAACTACACCTGTGTGGCCAAGAATATTGTGGCCAAGCGCCGGAGCACGACGGCCACAGTCATCGTCTATG
Seq A exon
GTGCGGATGGGTGTTTGCTGGCATGTGCTGCAATCCTGACCTGGGGTGCCCTCTGGTGGGAGCTCTCAGGTGGAGGCCTGAAGCAATCCATCCCCTACCCCCACCCCACCCCCACTGCCACTTCCCCCTAAACTGCCAGTGGGCCCCCTAAACTGTATGGAGAGTACAGATAGATAGGTGGCCAAGTCAGGACTCTGGGTCCCCTGATGGGAGCACGCTATTTCTCAGGACCCTTTGGCCCTCTCTATAAAAAGCCCAATTCTCCTGAGTTAGTCCCAAGGCAGGGTCACAGCCAGACAGCCAAGGATGCTGTCCAGGCCTGTTGCTGCTTTCTGCTGTTTCTCTGGATCTAAGGACAGGAGAAAACCACAGTGGAGGTGTCTAAAATTTAGTAGGGAGTCCTCTCCTGAGATTTAGTCCCAGGCCAAATCCCAGGTAACCCATCACAAAGTGGGTGACCCTAGTTAACTGTTACCCTCTACCAAGTACCCATCACACACTGTGTGACCCTGGTTAGGTGTCACCCTTTACCAGTACCCATCATACACTGGGTGACCCTCATTAACTGTTACCCTCTGCCAAGTACCCACCACACACCGTGTGACTCCAGTTAGGTGTTACTCCTCTAACAACTTTACTGCACCACTGTACAACAGGTCAGGATGAGATAGTGACTTCCTAGACCCTCTCAGGTGCCAACAGTGGCATCTCAGTGCCCAGCCCCAAGGGTGAATGGCTCCACCCAGCGTGGCTGGGTTAGTAAAGGTGGGTGATGGGCTGGAAATGACCTGGAGGAAACCAAATCCATGTTAGTCATGTGATGGCCCATCCCTGTAG
Seq C2 exon
TGAACGGAGGTTGGTCCAGCTGGGCAGAATGGTCACCCTGCTCTAACCGCTGCGGCCGAGGTTGGCAGAAACGTACTAGGACCTGCACCAACCCAGCCCCACTCAATGGAGGTGCCTTCTGCGAGGGACAGGCTTTCCAGAAGACGGCTTGCACCACCGTGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=WD(100=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAATGGCTCAAGAATGAAGA
R:
TGCAAGCCGTCTTCTGGAAAG
Band lengths:
334-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]