GgaINT0042386 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11353683-11354340:+
Coord C1 exon
chr6:11353683-11353863
Coord A exon
chr6:11353864-11354172
Coord C2 exon
chr6:11354173-11354340
Length
309 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTG
5' ss Score
4.16
3' ss Seq
ATGGCTGTCTCTTCCTGCAGTGA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGGAGTGGCTAAGGAACGAGGATGTCATTGATCCCACCCAGGACACCAACTTCCTCATCACCATTGATCACAACCTCATCATCAAGCAGGCCCGGCTCTTGGACACTGCTAATTACACCTGCATGGCCAAGAACATCGTAGCCAAGCGCCGGAGCACCACAGCTGCTGTCATTGTCTATG
Seq A exon
GTACTGGTTCTTGCTTTTGGGAAAGGGCCATGTCTGTGAGCAGAGGGGACTGTGGGCACTTCCTGGAGGTGGTAGGAGGGAACTGCACTGGGCATTGCATTTATGTTAGGCAATGGCCACGGCCTGCAGAACTGGCATGTCTACCAGGTCATTAGGAGATGTTATTAGGATGTTCTTAGGTGTAGGTATCTGCGAACATTCCCAGTTGGAGGTGGGACCATCTGAGCCTTCGCTGCCAAAATGGACTCTTGTTACTGCATTGCTTTGGCTTTGCGCATCACATGTTCCCATGGCTGTCTCTTCCTGCAG
Seq C2 exon
TGAACGGTGGCTGGTCCACCTGGTCCGAGTGGTCTCCTTGCAACAACCGCTGTGGCCGGGGCTGGCAGAAGCGCACCCGGACGTGTACCAACCCTGCCCCACTCAATGGCGGCTCCTTCTGCGATGGGCAGCCCTTCCAGAAAGTAACCTGCACCACGCTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=PU(96.2=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTGGCTAAGGAACGAGGA
R:
GCGTGGTGCAGGTTACTTTCT
Band lengths:
338-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]