HsaINT0177871 @ hg38
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
Coordinates
chr10:71286689-71287765:+
Coord C1 exon
chr10:71286689-71286869
Coord A exon
chr10:71286870-71287597
Coord C2 exon
chr10:71287598-71287765
Length
728 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGG
5' ss Score
7.99
3' ss Seq
TGACAGCTGCCGCCTTGCAGTGA
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTGGAATGGCTCAAGAATGAGGATGTCATCGACCCCACCCAGGACACCAACTTCCTGCTCACCATCGACCACAACCTCATCATCCGCCAGGCCCGCCTGTCGGACACTGCCAACTATACCTGCGTGGCCAAGAACATCGTGGCCAAACGCCGGAGCACCACTGCCACCGTCATCGTCTACG
Seq A exon
GTGCGGGCCTTTCGGAGTGGGAGGGGCAGACACGGCCAAGGGAGGGAGGAGAGAGCCTGGGGGTAGGGGGGACCCCTGGATTGGTAGGGAGGATGCAGCCCAGAGAGGGGAAGTGAATTGACCAAGATCACAACACAGCAGAATTCATGGCCAAGTTGGGCATTCCTGGGTTCCCAGCCAGGAACACTCCCCAGTTCTCAAGATGCCTTGCCTAACTCTGAAGGAGTTCTCCAAGTCTGGGGGCTGAGGCAGGGCCCAGTCAGTATGTCCAGAAGGCTGTTGTCCTGGTAGAGTTAAGGACCATTGCCCAGGCTTGTGAGCTATTCTCTGCTGCCCCCTTGGGCCCTATGGGTGGGAGGAGTGGAGCCACAGCTGAGGTGACTTGACAGAGTTTTAGAAAGAACCTTGTGCTAGGTTCCAGCTGCAGGCAGTCCCAGGCCCCCATCACTCCCAGGGTGACCCTGGGGAAGTGGCAGCCCTTTCTGGACCTTCTTTGCCGTCTTACAATGAGGTGGGGCATAGACAGTGACTTCCCGGATCCCCTCTGGTGCTGACGGTTACAGCCCAGCTCTATCTGCCAGTTCTGAGTCCCTACACTGTAGGCAAAAGGGGTCTCACTAGGAAGGCCAGGCTTCAGCAGAGGGGCCTCGTCAGGGTGAGGGACGGGTTTGGGGGAGGGCAGAGGGTTCCAGAGCCAAGCCATCCAGTTGACAGCTGCCGCCTTGCAG
Seq C2 exon
TGAATGGCGGCTGGTCCAGCTGGGCAGAGTGGTCACCCTGCTCCAACCGCTGTGGCCGAGGCTGGCAGAAGCGCACCCGGACCTGCACCAACCCCGCTCCACTCAACGGAGGGGCCTTCTGCGAGGGCCAGGCATTCCAGAAGACCGCCTGCACCACCATCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731:ENST00000373192:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(63.7=95.1)
A:
NA
C2:
PF0009014=TSP_1=WD(100=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGGATGTCATCGACCCCA
R:
CTGGGCAGATGGTGGTGC
Band lengths:
334-1062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains