BtaINT0157574 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30784478-30785866:+
Coord C1 exon
chr6:30784478-30784656
Coord A exon
chr6:30784657-30785414
Coord C2 exon
chr6:30785415-30785866
Length
758 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTCCCATTACCAATTACAGGTA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAACCTACTGGCATGGATCTGCCGCTTCTGGACCCAGCGAGCACCATCACCACCATGACGGGCCCCAGCGCTTTCAGCATCCCGCCCCCGATCCGGCAGAAGCTCTGTAGCAGCCTGGATGCCCCGCAGACCAGGGGTCACGACTGGAGGATGCTGGCCCATAAGCTCAACCTGGACAG
Seq A exon
GTGGGTATGACCAGGCTTCAAGCCTGGTTCCTGTCAGACACAGGGCTTCAGGACTGATAACTGTTAGAGCAACATTCTTTTTTGTCTTTCCATCTGCACATTTACTTGCTTTTCATTCTGCCAACATGTATTAAGTTCCTACCTTGTCTCTTGCACCATGGTGTTGCAGATACATGGTTGAGAGACATCCTGGGCTTCTCTGACTTTTCTAAGCATCGAGTTTTATGATCTACTTCGCAAGGCTGATGGGCTAAATCCCCCTAAATGATATAGCCATTCACTAATTATTGTTCCTCACCTACTGTTGAAGCAGGACCTAATGCTGGATGGGTAATTAACATGCTAAACACAGCAGTGCTGTTATGAAGAGACCTCAGGAGCCTCTTCTCTTTAGAACTTTGCCATCACTACCAAGCAAAACCCCAGGCCTGACCTGTCAAAGATGATCAGAGGCTGGGCTGGAAAGAAAACATAAGCCTCTTGATTTCCTGTTCAGGATGTGACCCATAGACATCTTGTCTCTTAAATTATCTTACTCAGAGTTGAGGTTAACAAAGTTAAGTATCACGTCTCCTGTCTGGGGCTGACCTAATTAAACATGAGCTAGTTATTCAGGACAGCTCACTGCAAGCCCCAGTTTCTCAAGGGGGACCAGGATACTTATAGAAATGCAGAAACAAAAAGGTTTCGTCAACACCGAAAAGAAAACAGACCCATAAATCACACCGTTCAGCCCTTTTTCCCATTACCAATTACAG
Seq C2 exon
GTACTTGAATTACTTTGCCACCAAATCAAGTCCAACTGGTGTCATCCTGGATCTCTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCGTGCTGGCAGCTGTCTTAGAGGAAATGGGAAGACATGAAACAGTAGTGTCATTAGCAGAAGGGCAGTACTGACCCAGGCTGGGGCTGAAGTGCAGGAGGAGAGCCCAGGGGCTCACAGCTGAGGAGGAACCCCGTCTGGACCAGTGAGCTCCACAGAGAAGACTGCAGCGGGAGAGAGAAGGCAGACACAGCCACCGATGTCCACGCCCACTCTGCTCGGACACCGCCACAGGAGTTCAGGACAGTTGTACAAATGTGTATCTTGAATTTAGAAATCAACCTAATTTTCCTCTTCGTTGGGCTGTATGCTGTGTGGTACAGGATCTTACAGTTTCCTAGGAAACGCTTTTTATTGCTATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084:ENSBTAT00000039753:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(33.8=45.0)
A:
NA
C2:
PF0053117=Death=PD(65.0=94.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTACTGGCATGGATCTGC
R:
CTGGGTCAGTACTGCCCTTCT
Band lengths:
346-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]