HsaINT0177882 @ hg19
Intron Retention
Gene
ENSG00000182168 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:12569]
Coordinates
chr4:96083656-96091483:-
Coord C1 exon
chr4:96091305-96091483
Coord A exon
chr4:96090551-96091304
Coord C2 exon
chr4:96083656-96090550
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTCTCTTTCCCAATTACAGGTA
3' ss Score
11.42
Exon sequences
Seq C1 exon
GAACCTACTGGCATCGATTTGCCGCTGCTGGATCCTGCGAACACCATCACCACGGTCACGGGGCCCAGTGCTTTCAGCATCCCTCTCCCTATCCGGCAGAAGCTCTGTAGCAGCCTGGATGCCCCCCAGACGAGAGGCCATGACTGGAGGATGCTGGCCCATAAGCTGAACCTGGACAG
Seq A exon
GTGGGTATGGTCTGGCCCCAAGACTAGCTTCTTTCTGTTAGTGCCCTCCAGGACCGATAACTATTAGACGTAGGGTTAGCTTCATTTTTTTTTCCATCCACACATCTATTTAATTTTTCATTTTGCAAATATGCATTAAGCTCTGTCCTTGTACCTTGCACTACGGGCTTGCAAAGAGTGCTAAGAGACATTCTGAGCTTATCTGGCATTGGTAAGTATCAAGTTTTGTGATGCACTTTGCCAAGCTGATGGGCTAAATTCCCCAAATCATATAGCCATTCACTACCGTAGTTATTGCTCCTCCTCTGCAGTTGAGCAGGACCTAATGTTTGATTAATAATTAGCATGCCAACACAGCACTGATATTAAGTTATAAAGAGACCTCTGGAGCGTCTACTTTGTGGAGTGTCACCGTCACTACCAAACATAACATGTGGCATGACCTGTCAAAGATCATCCAAGCCTGGACTAGAAAGAAAACATAAGTCTCTTGATTTCCTGTTTAGAATATGACCCATAGACATCTTGTCTCTTAAATTATCTCACTCAGAGCTGAGGTTCACAAAGTTAAACATCACATCCCCTGTCTGGGGCTGATCTAATTAAGCATGGGCTAGTTATTTAGGATGGCTCACTGTCAGCCACAATGGGACCAGGAAACTTAAAGACAAGTAGAGAGACAGAAAGGTTTAGCTGAGGAAAAATAGATATGTAAGTCACACTGTTGAGCACATTTTCTCTTTCCCAATTACAG
Seq C2 exon
GTACTTGAATTACTTTGCCACCAAATCCAGCCCAACTGGCGTAATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCAGCTGTCTTGGAAGAAATGGGAAGACATGAAACGGTGGTGTCCTTAGCAGCAGAAGGGCAGTATTAACCACCATGCTGGAAGGGGAAATGAAGGACAAAAATGCACAGGGAGTCTGTGGCCGTCCAGGTGAATCACAGCTGAGGAGGAAATCCAGATGAGACCAATGCACTTCACAGGCAAGACTGCAGCAGGAGCCAGAAGGAAAACAGATACAACTGCCCATGTACATGCCCACTTTACTCGGACATCATCACGGGAGTTAAGAAAAATTGTGTAAATTTGTACCTTGAATTTAGCTATCAACCTAATTTTCCTCTTAGTTGGGCTGTATGCTGTGTGGTACAGGATCTTACAGTTTCCTAGGAAACGCTTTTTATTGCTATCCAGATATATGGATAAACTTTCTTAACAAACCCAATTTCTACAAATGTTGTTTACATCAAATTGGACAGGGATGCAGACACTGTCCATGGCTCGTTCTATTTTTGTTCAAATCATTTGAAGTTGAAGCTGTGGACGGTTTGTTGTGTCTATTTCAGATTAGTAATTTACAGAGAAATCACAGACTTTTGCTACAAATCGTGTGCATCAAGTGTCTCAGATAATCCTCCCATCAGTGTTCTGTTTCTAGAACTTGTAGAACCAGTGTTACTGTTTGTATCAGGGAAGTGGAGAATCTAAGTGTAAAAAAGAAATAACTAAGACTCCTATTCCTTGGAGGGACCCTTCTGGTGCCCTTTGGGAATAAAGCTGTAGCACTGCAGGGAAGACAGTGATTCATGTTCAACCCCACAAACAAGCATTTTTTTCACAACATGTGTGTTTGTTTGTAATATGCAATATGAAGTGTTTTTTTTTAAAGGTATTATTATTATTTACAGGTATTCTGGTAAAATGATTTTTTTAAATTTCTATTTTTGTTAGCAGTGCTGTTTGTTAGTATTTGGTTATTGACTAGACCTGTCCCACCTTTTCACCTATCAAGGTGGGTGTGGTCATCAGTTTAATTCAACATGCATCACTTCCTTGACCTTTTACCTTTCCCTTATTCCACCCCAGAAAGGTGATTGATAAATGCTGAATGGCTTTGTCAGTCTGTTCCTTCAGCTTGCTCAGGCAGGGTCTTTCTTTCTCCTCTGAGGAGTCTTAAGGAGACGTGTTCTCTATTAAGTTCACTTAATATTGCCGTTGTGTGGCCCCACGTCGACTCCCTATGGTGCTCTACTCTAGAGGCAGTGTGGTTGGAGGAATGGACTCTAAACTGGAGATCAAGAAACCAGTTCTCATTGTGGGTCTGTCACTGTCTTGTTGCGCCACCTTGAGAAAGTCATTTAACCACACGACCTCAGTGTCCTCACTAGAAAGTGAAAGGGTGGGATTAGATCATCTCCAAGTTCTGAAATGCTCAACTTCCACCGTGATGCCTCCAGTCTCATTCATCAGTCTGAAGACCACAATGGACTCTGACCTGGATCATCATTTAAAAATCATCAGCTGGTCTTTTGCCCAGGCTATGTTACGCCTTTCAAGTAGTTCTGACAAGGAAGATGATTATTCTAACCAGCATTATGATGTTGTTTGTTTGGCCTGAGTCGCTCTGCATCATTGCATTATGCTGTTCACTGAGAGATGACATCCCTTTATTATCATTTTCTTAGCCTCTCTTGGGATGCCCCTGCCCCCAGCCTTCCTGACTGGTTGCAAATTCTGTTTTTTATTATTGTCTTGGCATCTTGATATCTAGACCACTCCTACAAGTTTATCTGGCAGTAGGAACTTGGTGCATTTTTTTCTACGCTACACCCCCCCACCCTTAATCTTTCTTTGCTGTCATAATATTCAGTAGCATTTATAAAAGCTGTCTAGTTAGCTCTTTAAAAACTTTTGTCCTGCAAAATGTTTGTTAGTCAACACACTACTTTGTGTAAACAACTATTATGTTTCCTTGGGACCATCACAAGCTCTTTAACAAACACAAGGACTCAATTCATTCAGCAGGTGGGGATTAAAGAATCAAAGCCCAGTAGCAAAACCAAAACTGAAGAACAAGCAGACATGTGTATGAATCGGAACCTTTAGAACATGACTGTGGTTTACTTTTAGGCTGGAGGCACACAAGTTGCTGAACAGACTTGAATTATACATGTGCTTCCATCTTTCCATGTTTCCGCTCCTATTTTGGTAGCATCTTGAGATTCCTTGATGCCTCCGCCATCCTCATCCCTGAGGAACTGCTGATACCTTGCTATGGAACCTCTTCTTTCTTTCATGCTTTTTATTCCGTATCTTCTGTTTTGGACATACATACATATATTCTATAAAATCTCTCTCAGCCCACCCCCTGCATTAGGATTTCCATATTTAAAATATTTGTACACTGACTGGGGAAGGGAGAGATTGCACTATAAACAAGTTCAGTGGATGTTTGTAGCAATGAGTAAAACTGTATTCTAAATTAAAAATCAAATATATATACACGCAGTTATACACACACATTTTTTAAAAGGAGGAGGAGGAAAGAGAGCTATTGTCCATTCCTACATTTTGAAATAAACTTGTCAAGATTACGCATCAGTACCAGGGTTGTGGAATCATCTATGGAAATCAAGAACTAGAATCTGAACTGAATGGTCAAAGAAACTTCTATGCCTAGTGAAAACTAGAGGGGAGCAACTATGTAGCTATGAACATGAATCAATTCCATAACTGTTACTAAAAACTTATTTTGACTAAAAAGTCACCAACACAGAACTATTGAACACAAACAGGAATTGTTTGTCTTACTGAAGTCACTGAGAACCCTTGGGGTTCACTTCAGATGCTTTTTTGGTTCAACTTCCCACCACCAGAAAAGGGAAAAGTGATTGATTTCGTGTGTGAGGTACTCATCTGTCAGAACCCTTAATGTTTCCTATTAAGTGAATGACAACTTCCATACATACACTATTTATACCAAATAATTTTCACTACAAATTCTGATTTCCTTCTCCTTTGGAGTAAAGTAATAGCTGTTAGATTGCTTTCAAACTTAGAAGGTCCAGATATAACAGTTCATTTCATAGGAAGCCACTTCATCAACCATTCTATGTGATACATCCTGCTTCTTTCTACACCGCTGGAGAGGCAGTTTGGCTGGTTTCATTTGGATAGAAAAAACTATCATTTGTGCATGCTGCCATCTAGTGGTGTACAACACAATCTAACCTGAGTTTAATATTCACTAGAATGTGTTTGACGAAGGGAATGAAAACCTGTAGAGTTCAAGGACCTTTATGACAAACAGATGTAGGGAAATTTTCACTTCAAATTTATAATTTTCTTATTCTCACTTTTTTTTCATTTGCATCACTCATCTCAATATTAGGTCACTGTGAGCCCAGTACATCAACTCATTCATACACAACATATCTTCAGTTGCTTCTTGTAACAGAACTATGTAAAATCTATATAAAACAGTCTTTGAAGAGTTGTCATTTTTAACACTTATGGTTTTCATTGGGGTTTGTATACTTTAAATCTCCTTTTAGTTCCTTAATATTTATCTTTGGAAATGTAAGAAGTATCTGCTTAGAAAGAAATAAGTCTTATATATGCGAATGGAATACTATGTCTAGGGAAGAGAAAATTGGGGTTGTTAATCAAAGGGAAGAAAGCAGCTTCTTTTCTGCTGAATTTGGGAATCCAAAGGCAGAGGTTTCATCCTGTTTTTATTTTCTTCTTATCACACTCTTTCAAGTTTCCTTAATGTATCTGGAAGGAATAGAAGTTGGATTCAGAATTGATAACTGGCATGGTGATGACAAACCTGTGTAACACCAAGGTTCTCACAGCTAACAGCTGTTTCACAAACGGCATCTTCCAAATGAACAGTCACCTCTGCTATGCAGAAAACCCCCATCCTGCTGTGAGCAAGTTAGGCTCTTCAAGAACTGGACAACTTTTGGGTGAGGTGTTCAATATCAAACTGCATAATCATTAGCCATTTTCATATATACTATTTTATAGATTTAAGTCTCTCAACTATCAAAAAGTAGAGCGATTTTCAGGAGAAAAAAGTCGTGGGGACTGAGTTCAGGACACCCTGAAACTATGCGACCAGTAATTTTTTTAAGGTATTTTTTCCTACAAGTAAGGTATCTGAAAAGTCAACGTTTTGAGGGTGGAATCAAGACTTTTCACTTCTCCTGGCAAAGAGCAACAAGGCTCTTGTCTCGTGTCCTTCTGTGTGTCTCTGTCAGGATCACAGCAGCTGTGCTCTTGGTCTGCTTACTCCTCTGTAATCCACGTATGCAGAAGGGAGTTAATAAGGTGATCACCATCTCCCCAGAATTCAAAGGTCTTTGCCTCTATAAGGTCTGCCCCTATGGGGCCAGGAAAATATAAACCTATATAAGGACTTGCAAGAGAGCATAAAGAAGGTAGAAAAGGTTTACTTGTTGGGTTTTCAAGCCTTCAAGTTGAATGAGTCTTAGCTTTTGCTGGGCAGTTGTTCTGGACAAGTCATCAGTTTCATGTGGAGAACTCAGTGTAAGCCCAAGGCTAATGAATGAGAGGGGTCCCATGGAAACACAGCTGAAATGAAATGGGACTTTATCCATCTTCTTTGAGAATGGAAGAGCTTTTGTGAAGCAGTACATCATTGCTCAAGATAATGGTTGATAAGCATTAGATTTTATAGATCTAATAAGGAAAATATTTTATTATCTCAAGTTAACAAAACATTTTTTTACCTCTCGAGTGCCTCATAGGACCAACTATTACTCTTTGGCTTTTATTTTTCTTTTTGTATTATTTTTATATATTCTTTAACCTTGCTGAGCTAGTATTGACTGAAATCTTTAGAACTTTGCCTCTGGGCAATGAAGTAATGTTTCTCTACCCTAAGATATCTATTTGTATAATCTCTGGCTGTAATGATCACTTTGGAAGATTTCCTTTGCATCTCTAATTATTTCTTTTTAATGGAATAAGGCATAAGGGGGAATAAATATATTGTAACCAATGTTATGTAAACCCATATCCATACAGGCCAGGAAAGCCAAATGAAGTCATTTCCAGAATTCTAGTGTGAAAAACCTATTTTTGAAAAGTGGGGAGATGGCTTTGTGTAGAACTGGGTGGGTTTTCTCTGCAGACTAAGTCTAGCCATGAGCTTCCAGATCCTTTAGTTTTATCAGCCTTGTGCTTACCCCATTTTCATAAATGCTACTTTAACAGCCAGTCTTCATAAGTCATGGTTCCTAGGTTTTCCTGTCACCTCATTGTATTCATCTGTGGTAGGATATTAACGGGCTCATTCAACCAAATGTAATGTGTGCCTCAGACCTATTTAGCATGGTTGGGGGGCATCAGCAGGACAAACCAACAGGTACTCCGCAAGTGTACTGGCACAGCAAGCCCACCAATTATTAGCAGCTCTTCATCAGCCTGCTGTCTACTCAGACGCTTGCCTACTGAAGGGACCTGTCCAGAGATCTTCTGGAATCCCAGGTTGGGAATCTCTGCAGAATGTCGTGACAGTTGTGGCCCAACTAGCTTCTGAGTAGAAACAAGGAAGCTACCCTGAGATATAGTCAGCTGCCCACCTGCCATAGTATTTGCTACTGAATGCCAGCCTTTTAACATACCATTTCAGATTTGTCCTTCAACAAAAATATAAATTGCAAGTCATACCATTTAAGGGTCTTTTACAAATATGTCTAAATTGTGTGTCATTTTTAAGTTCCAAAGGTCTACTGGACTAAGTACTATCAGACCAGCTGTAGAACCTGATGGCGCTGATCCGGGGTGGAATAACCCTCAGTACTGGTGTGTAGAAGATGAATTGTAGGCAGGTTTTGCTGATCAGCAGCCTAAGGATTGATGGGCTCTCTTTTGGCCTCTGATCCTGAGCACTATGGAGGCAGCATCAGAGAATGGGGACCTGAGCTACATAGGTTCTCAATGTTAAAACAACTCTGTTCGGAGTGACATATAAGAGCAAGAAATCTACAGCTGGTGTAAAATACCTTTGCCTTTTCTATCCCGAAAGTAACAAATGGCATCTGTACATGTAGGGGTAAAAACTCAGATGTCTACTCCTCCAGGCCATGGACAAGAAAAAGTACAGCAGTCAGAACAGTGGAACAAGTGATTTGCATTCTCTTCTTCACGCTTTCCTAGATCTGCCATTGGTAGCGCAGCCCTCGCCCTCCAGACATAATGCATCGAGCCCAGTTGCAGGGAACATCACTGTGTGTGTGTGATGTCATGGTGTTATATGTGTTGAGTTTAATGTTGAGCTGAAGCAAGTTGGTGACCTTCCTCTTTGCTCTTTGTAAAGAAGACACCAATGTTTGTCAGAGAAAAATCCCCAGCAGTCGTGTTGAAGAGGCAGTGTCATCCACCTACTGTCCCCTTTGGAACAGTTCAACTGCAGAAAGGTCGGATTGAGGTTTTGTGCTTTGTCGTTTTTCTTTTTTAAACAAAACATGACAACCTTGGCTTTTCCGATATGGAACACTTTTGTTGTTGTGGAGTTCCCTCTTGCTGTATCTTCTATGCAATTCCTTTTCTAAAAAAACCCCCCGGCAGAGGCAGAGTGCCCTCCGGATATCTGTCCGGCGCCTTGCTGAGTGGTGGAGGTGAGGGATACCAGCTCCGGGTGTGCCTCTTTTCTCTCCCTGGCTGCCAATCCTGATTTTCCCTGCAGTCCCCTTGGTTTGTAAATTGCCTGCATTTATTCTGTCAGCCAACATGTACAAAATGTAAGAAAGAATTTTTAAACAGGTAATAAATTATATTTATAAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168-UNC5C:NM_003728:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(33.8=45.0)
A:
NA
C2:
PF0053117=Death=PD(65.0=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGCCATGACTGGAGGAT
R:
TGTTTTCCTTCTGGCTCCTGC
Band lengths:
356-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)