RnoINT0160619 @ rn6
Intron Retention
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247390001-247391299:+
Coord C1 exon
chr2:247390001-247390179
Coord A exon
chr2:247390180-247390935
Coord C2 exon
chr2:247390936-247391299
Length
756 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCCATTCCCAATTGCAGGTA
3' ss Score
10.47
Exon sequences
Seq C1 exon
GAACCTACTGGTATCGATTTGCCTCTCCTGGACCCTGCTAGCACCATTACCACTGTCACTGGACCAAGTGCTTTCAGCATCCCTCTTCCTATCCGGCAGAAGCTATGTAGCAGCCTGGATGCCCCCCAAACAAGAGGCCATGACTGGAGGATGCTGGCCCACAAACTTAACCTGGACAG
Seq A exon
GTGAGTGTGCCCAGGCTTCTGGACCTACGGCTTTCCTTTGGCAGAGGTCCCCAGGACTGAAAGTAGTTAGATAGAAAGTAATAGTTTTTTTCTTCCCACTACATATCTGTTTACATTTTCATTCTGAAAGTATGCATTAAGCTCTTGTACTAGGAGCTTCCAAACAGTTCCAAGAGAAGTCCTGGGTTATATGACATTTATCAGTGTCAAGATTTGTGATCTACTTGGTCTAGCTCATGTGCTAAAAGCTCCTGAATATGATGTCTATTCACTAAAGTAATTATTGCTCATCCATCACCAGTTGAACAAGACGTAATGTGTGATGAATAATTTACATGCTCACACAGGCACTTGTATTAAGTTATAAAGAGACCCCGAGAGCCTCTGCCTTGTAGAATGTATCTGTCACCTCCAAAGAAGAGATGTGGCGTGACCTGTCAAAGATCATCAGAGTCTGGGCTGGACAGAAAACATACACGCCTCTTGATTTCCTGTTTAGGACAAAACCCACAGACACATTGTCTCTTAAATTATCCTATTCAGAGTTGAGGTTAACAAAGTTAAACAGCACATGTCCTGTCTGGGGCTGATCTAATTAGGAATAGAGCAATCGTTAAATGGGTTTCACTGGAGTCCACTGTAGGACTAATGTCCTTCAAGACAGTCAGGTTGAGCACAGACTTAGAGGAGAAGATAATACTGTAACTAGACCTGTAAATCCCACCTTTCAGCCACATTTCCCATTCCCAATTGCAG
Seq C2 exon
GTACTTGAATTACTTTGCCACCAAATCGAGCCCGACTGGCGTAATCCTGGATCTCTGGGAAGCACAGAACTTCCCCGATGGAAACCTGAGCATGCTGGCAGCCGTCCTGGAAGAAATGGGAAGACACGAAACCGTAGTGTCCTTGGCAGCAGAAGGTCAGTATTGACCACACCGGAACCGACACTGAAGGACAAAATTACACAGGGAGTCTGTGTTCAGGGGAACCACATCTGAGGAGGAAATCCAGATAGGACCAAGGCGCTTTACAGGCAAGATGGCAACAGGAAACGTGGGGGACAGATACAACCACCAAGGTACACGCCCACTTCATTCGGACAGTACCACCACGGGAGCTAAGGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071:ENSRNOT00000050330:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(33.8=45.0)
A:
NA
C2:
PF0053117=Death=PD(65.0=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTCTTCCTATCCGGCA
R:
TCCTCCTCAGATGTGGTTCCC
Band lengths:
342-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]