GgaINT0077572 @ galGal3
Intron Retention
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60174910-60175637:-
Coord C1 exon
chr4:60175459-60175637
Coord A exon
chr4:60175242-60175458
Coord C2 exon
chr4:60174910-60175241
Length
217 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTCCTTTTTGCTTTGCAGGTA
3' ss Score
12.13
Exon sequences
Seq C1 exon
GAACCCACTGGCATTGATTATCCCATCATGGATTCAGCAGGCAGCATCACAACGATAGTTGGGCCCAACGCTTTCAGCATCCCCCTCCCAATAAGGCAGAAGCTCTGCAGCAGCCTGGATGCACCCCAGACCCGGGGCCATGACTGGAGGATGCTGGCCCACAAGCTGAAATTGGACAG
Seq A exon
GTGAGAAGGGTAACGCACTTGCTGGGAATGCAAAGCCCCTTGGAGGTAGGTGCAAAGGGGCTTCAGGAAAATCTTGCTGAGATGAGTGACAGAAGATGTACCTTCAGACTGCTCAGATTGATCACATAGTAGATGAGCACCCTGACTGGTGTTAGGGATGGTCTAGAATTCTGAATTCATGCAGCTCAAAGAAACAAATCTCCTTTTTGCTTTGCAG
Seq C2 exon
GTACCTAAATTATTTTGCTACGAAGTCGAGTCCCACTGGGGTGATCCTGGATCTCTGGGAAGCCCAGAATTTCCCTGATGGCAACCTGAGCATGCTGGCAGCAGTGCTGGAAGAAATGGGACGACATGAAACCGTTGTTTCTTTGGCAGCAGAAGGAAATTACTGATGCAGCCTTGGCGTGAACAGGAAGGACAGACGCAGGGAGCGGTAATGCCCTGTTATTGCAAGCATTTGAAATGAAAACCCAGACCAATGAGTTACACAAGAGACATTTCAGAGAAGAAAGCAAGCAAACAAACAGAAAAAATATACAGCCCTGACCTTCACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219:ENSGALT00000019955:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(33.8=45.0)
A:
NA
C2:
PF0053117=Death=PD(65.0=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGGATTCAGCAGGCAGC
R:
CTGCTGCCAAAGAAACAACGG
Band lengths:
307-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]