MmuINT0170604 @ mm10
Intron Retention
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 netrin receptor C [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141827501-141834924:+
Coord C1 exon
chr3:141827501-141827679
Coord A exon
chr3:141827680-141828406
Coord C2 exon
chr3:141828407-141834924
Length
727 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCCCATTCTTGATTGCAGGTA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GAACCTACTGGCATCGACTTACCTCTCCTGGACCCTGCTAGTACCATCACCACTGTCACCGGACCAAGTGCTTTCAGCATTCCTCTCCCTATCCGGCAGAAGCTATGCAGCAGCCTGGATGCCCCTCAAACAAGAGGCCATGACTGGAGGATGCTGGCCCATAAACTCAACCTGGACAG
Seq A exon
GTGAGTGTGTCCAGGCTTCTAGACCTACTGTTTTCATTTAGCAGAGATTCCAGGACTGAAAGGAATGATATAGAAAGTGGCACTTTTCTCTTCCCACTACACATCTGTTTATATTTTCATTCTGACTGTGAGCTTCCAAACAATTCCAAGAGAATTCCTGGGATATATGACATTTATCAGTGTCAAGATTTGTGATAGACTTTACCTAGCTCATGTGCTAAGAGCTCCTAAATATGATGTCTATTCACTAAAGTAATTATTGTTCATCCATCGCCAGTTGAACAAGACGTAATGCATGATGAATAATTTACATGCTCACACAAGCACTTGTATTAAGTTATAAAGAGACCCTGAGAGCCTCTGCTTCGTAGAAAATATCTGTCACCTCCAAGGAAGAGATGTGGTATGACCTGTCAAAGATCATCAGAGTCCAGACTGGACAGAAAACATAAGCCTCTTGATTTCCTGTTTAGGACAAAACCCACAGACACGTTGTCTCTTAAATTATCCTATTCAGAGTTGAGGTTAACAAAGTTAAACAGCACATGTCCTGTCTGGAGCTGATCTAATTAGGAACCGAGCAATCATTAAGTGGAGTTCACTAGGATCCACGGTAGGACTGAAATGCTTCAAGACAGACAGGTTTAGTGCCAACGCAGAGAAGATAATACTGTAAATAGACCTGTAAATCACACCTCTAAGCATATTTTCCCATTCTTGATTGCAG
Seq C2 exon
GTACTTGAATTACTTTGCCACCAAATCGAGCCCAACTGGCGTAATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCAGCCGTCCTGGAAGAAATGGGAAGACATGAGACAGTGGTGTCCTTGGCAGCAGAAGGACAGTATTGACCACACTGGAACTAAAGCTGAAGGACACAATTACACAGGGAGTCTGTGTTCAGGGGAACCACATCTGAGGAGGAAATCCAGATAGGACCAAGGCGCTCTACAGGCAAGATGGCAACAGGAAACTTGGGGGACAGATATAACCACCAAGGTACACGCCCACTTCATTCGGACAGCACCACCGCGGGAGTTAAGAAAAATTGTGTAAATTTGTACCTTGAATTTAAGAATCAATCTAATTTTCTCTTCGTTGGGCTGTATGCTGTATGGTACAGGATCTTACAGTTTCCTAGGAAACGCTTTTTATTGCTATCCAGATGTATGGATAAACTTTCTTAACAAACCCAGTTTCTACAAATGTTGTTTACATCAAATTGGACAGGGATGCAGACACTGTCCATGGCTCGTTCTATTTTTGTTCAGATCATTTGAAGTTGAAGCTGTGGACAGTTTATTGTGTCTATTTCAGATTAGTAATTTACAGAGAAATCACAGACTTTTGCTAAAAATCATGTACATCAAGTGTCTCAGATAATCTTCCCATCAGTGTTCTGTTTCTGAAACTTGTTGGACCAGTATTGGCATTGGTATCAGGGAAGTGGAGAATCTAAATGTAAAGGAGAAATTGAGAAAATTCCTTATATCCTGGGGTAACCCCGTTGGTATCCTTTGGGAACAGAGCTCTAGCATTACAGGGGAGGTAGCTATTCATGTTCCTCCACACAAACATTTCTGTACCACATGTGTGTTTGTAATAAGCAATTTCAAGTGTTTTTTAAAAAATATTATCATTATTATTGATGATTATTACAAATATTCTAGTAAAAAGAATTTCCTTTTGTTTTAGTTAGCAATACTGTTAGTGTTTGGTGTTGACTAGACCTGCCTCCCTTTCTTGCCTAAAGAGGTGGGCATGGTCACCAGTTTAGTTCAATAGCTTTTGCTTCCTTGACCTTTGGTCTACCATTCTGTGGTGGAAAAGACAGAAATGCTCAATGGCTATGTCTGCTCTTTCAGCTTGCTCGGTCAGAGTCTTTCTGTTCTTGCTCTTATCATGAGGAGAGTTCTCTATGTAAAGTTCATTTACTCTTGTGGCTATCTGGGAGGCAGTATGGTTGTGGGAACAGTGTCTGAACTAGGAATCAGGAAACCAGTTATCCTTGTGGAGTTGGTCCCTGTATGGCTGTGTGACTTTGGGGAAAACATTGAAACTCACTGGCGCTCATTGCCCTTCTTTGTAAACTTTGTGGTGAGACCAGATCATCTCAAGGTTCCAGAATGCTGATCTCCCATTCAAATGTCATCATCCTTTTCTATCTTGCAGGCAGGATTGATTTGAACAGGGATTACTTCAACACACATTTGTTTGTCTTTATCTTTGTGTCATTATTGCATGATGTTGTTCGCTTAGAGATGGCATCCTTTTCTTACCATTGTCTTGACCTCTGCTGGGGCCCTAATGTCCAGCCTTCCAACTAACTGTAAATTCTACTTTACTCATTTATTGATCTCCAGATCTCAAGACCATTTCTACAAAAAGCCCATGCAGCTGAATGAATTGGTAACATTTTTCTTTCTTTATTACTCTTTGCTTTAGTAATATTCAGTTGTATTTATGTAGATTAGTGCTATAGGACCATCCTATAAAACGTTAGTTGTGCATACTCCTTGGGACCATCCTGGGTTTTGTTTGTTTGTTAGTTTGTTTTTATTTTTTGATATAGGAACTCCATTCAGCAGATAGTGAATGAAAACTTAGCAGCCCCACTGACATAGTTAAATAGAAAGCACCTATGCCCTTAAGTCAGAAACTTCAAAATATGGCTGTGGTGTACTTTGGGGCTAGAAGTATTCAGGTTGCTGAATGGATTCCATTGGGAATCATTTTGCCTAATACCCTCTGATTCTGTTACTTCCTGATACACGCTAACTCTTCTATCCTAGTCATTAAAGAACTGTGGGTACAGTTGTGGAGCCTCTTCCTTCATGCTGTTTGTCTTCTCTTTCAGAGATGTATTCTACAGTCTCTTTCTCTAACCATATTCATATATAAAAATCCTGGTCCCACTGACTGTGGAAGGGAAATTCTATACTCCTAACGAAGTTTGTTGGCTGATATCTGTAAGCATGAGTTTGTTCGAACTTTTAAGAGTTTGATTGATGTTCTTAAAAAGTAAGAGGAAGAAAGACTTTGCTGCCTCTTGAAACAAGTGTGAAGGTTCCTCTACACTTCTTGGATTTTGGAACCATCAAAGAAATCCAAACTGAGAGGTCTGGACTGGATGTTCTGTGTAACTTCAATGCTTTGTGCTAAGTCAAGAGGAACAAATATGTTGCTATTCTGGTTAATTTATCCTAAAAACTGTTAAGTCACCAACACAGAAATACTGAATATAACCAAAGCAACATTATTGAATATTTTGAGAGTCCTCGTGTTCAAGCATCTAGAGATACTTGCTTTTGTATTCAGACTCTCACAACAGGAAAAGGAAAAATGACTGATCTCTTATGAAGGAATCATATGTCATAAAACCACTTTCTATCATGTGAATGACAGTTTCCAAACTAGAACATACCATACATCAAATAATTTTCACTAAGCAGTCTGCTCTTTCTCCTTGGGAAGAAAATGATAGTTGTTAGATTGCTGCTTTCCAACACACACGTTTCACCTGCCACAGTTCATCTTAGAGGGAGCTTCATCATCACCCCTGTGGCATGTCTGACTTCTACAGAGCTTCTCAGGAATGCCTTGCTTGCTGTGGGTGGGTAGAAAAACAAATTATTTGTGCCTGGTGCCATCTAGTGGCCTGCCACATAGTTACTCAATGTCATATACAGCTTACAAAAAATTAACAAAGAGAGTTAAGTACCTGTGGAGTTCGACATTTGTGACAAATAGACATGGTGAAATTTACCTACATGTGTAATTCTCTTATTCTCGTATTCTTCAGTTAAATTATCCATTTTACAACTTTCTGGGTATAGCACGTCATCAACTTACTCATACACATCTTAAGTTACTTTCTTGTGATAGACATGTATGGAATCTGTATTTTTAAAAGTCTCTGAAAATTGTCATTGGGCTTTGCATATTTGAAATCTTTTAACTCCCAAACACTGACTTTTAGAAATATAAACTGTATTCACAAAGAAGAAAGATTCCCTGCCCAACAGCTCCACACACATGGCATCACCTTGGGCATATATATTCTTGCTAGGTATCCCAGAACATCATCAAATCCATGACCCTATTTCCACAGCCTCTCAAGTGGTGAGAGTTTAACTATGTACCACTATACCTGTTCAAACCTGCTCTACATTTGTAAATGAGAATCCTGTCTCTATGGACATGGAAGTTGTGGCTGTTAATCAAGACGAATGATCTTCAGATGAAGTAGACCTGAGATTAGGAATCTAAAACTTCATGTTCTCTTCTTATTGACATTAATTCAAATTGGCTTGAGTCTAAGCATGTGTCAAGAAAGTCACAGCCAAACATTTTCAAAGCAGACACATTGTCTCTGCTACACAAAGAATTCCATCCTGACCTGAGCAAATTAATCTCTTCTGGGAAAGGATAATTTGGGGAATAAGAGGTCCAAGATCAAAGTATATCATTAGCTATTTTCATATATTCTATGATTCTAAAGATTTTAATTATTCCACTATCAAAGAGTAGAGACATCCTTTAGGGGAAAGTTGCAATGACTATATTTAGGATCCTCTAGGAAATAGGTATTAAAACTAGGTTTTAAGGACATTTCTCCTAAAAATGATTGAAAGGGAAACACTCAGAGGGTAGGATTTAGACAGTTCACATCTGGAAGAGAGTAGATGGTTGCCTACATCTCTGTGTGTCTCTGATGAGGACCTGGCACCTATGATCCTGGGTCATTCACACACACCTACATAGCCATAGGACAAAGAGAGCTTATAGGGAGAATGTTCTATCCCACAATCCATACACATCCCTACAGTCTGCGCTCTGGAGCTAATCAATGTAGAAGGATGTTAGATAATATGAGAGAAAAAGTAAGAAAGATTTACTTATTCCCCGGTCTTCAAGATGAACACGAATTTGAGCTGAGTAATTGCTCTGGAAAAGTAATCTATTCAGAGATATGTGCTGGTGTAAGTCCAAGGCCAGTGGTGGCAAAGGAGGATTACAGAAACACAGTGTGGGTGGACTTAGGCTCGAGACACCTTTACTGAGCAGCTTTGTAAACCAGGACATCATTGTTCAAATCAATCATTTGTAAAGATGATAATGGCCAATGAGCATCTTATTTTATAGATCCAAAAGAAAAATATTTTTATTATTATTCTCAAGATAATAAAACTGGTTTTTTGCCTTCTGAGTGCCTCGTGGGACCAACTATCTTACTCCTTTAGTTTTGTATTGTTTTTGTATTTTTAAAGCATACTGAGCTGACATTGACTGAAAACCTTTTAACTCTCTGTCTATACAACAAAATCCTGTTTCTCTACCCCAAGATATCCGATTGTGTCACCTCTGCTTACACTGACCACTTTGACAGTCACCCGATAACTTTTTGATGGGATTGGGACTATGAGGAATACACTTATTATAACCAATACTAATTTATGGTCATATAGGCTAAATAAGCCATATGAAGTCATACCTGTTTCTAAAAAGCTGACACTTAAGCTCATTGGTTTAATGAGTAGAGATGGCCTGCATGTACCAGGGTGGAATATCTCTTCAAACTAACAATGCAGTTGTGAATCCTTTAGTTCTTTTGGTCAAATGGTTGCCCCCTTTTCTGAAAACTTACTGCAATAGTCTTCAGAAAGTCCAGTGGGCTTGCCTACTTCCTTTCTTGATCTGTGGTGGGATATTAACAGGCTTATTCAACCAAAGGTGTTTTCAGAGGCCTATTTAATTGTGGCTGGGGTATCCTCAGGACAAATAGATGCACTCCATAAATATACTAGCAGGCAAAGCCAAAGAGATGTAAGTGGCGACCTGCAAGTCTTCAGTATACTAAACTTTATATGAAGGTATCTATCCCAAGAGTACCAAAATGCTACATTGGAAACCCTTGCCATATATCAGGACAGTCATGGCCAAACCCACTAGTTACTAAGCAGAAAACCAGAGAGTGTCCTGAAATACAATCAGCTGTCCACCAGCCATGTTATTTGCTATGGTACACCAGCTTTTTATATATCATTTGGGAACCTGTGCTATGGCAGAATTATAAATTGCAGGTAAAATTACTGTAAGACCCATTTTAAATAAGCCTAAACCCCATACCATCTTTATATGCCAAAGGCCTAATGCCATGGAGCCTGATGACCCGTGGCCATGGTGACTGTCAACTGTGGGCTAGTTGTCTTGATGGGCAGCCTAAGGGATGAGCTCTCTGCCTTTGATCTTCACTCAGTGATGATGTGGCAACATCAAAGCATCCTGATGAGCTCTGTGCTGTATTAAACCCATTTTAAGATAGCATTCCAAACAAATCCACAGCTAGTAGAAAATGCCTTTGCCCATTTCTGTGTTTCTAAAGACATTAATGGCACCTATAACTGCATACATATGTATTCAGATATATTTTTCTCCAGATTATTGGAAAGAAAGAGGAGCCAGTTGAAGACATGACTCGCATTCTTTCTTTCACTTGTTCCTAGTCCCGACTATGGGTATTGATGCCCTCACCCTTCAGACAATGTATTTAGCCAAGTTGCAGGGAATATCATTATTGTATGTATACTGTGTGTATGTGTGTGTGTGTGTATGTGTGTGTAAGATGTCACAGTGTTGTGTTTATTAAGCTTAATGTTGAGCTGTAAGGAACCAGTAATCTTCCTCCGTGCTCTAAAGAAGAAAACCCATATTCATGAGAGAACAATCCCAGCTTTCTGCTTTAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAAGCAGCTGGGTCACCCTCCTGCTGTCTTCTTTGGACCAGTTCAACTTCAGAAGTATCAGGTTGAAATTTTATGCTTTGTCAGTTTTTCTTTTTTTAGCAAAACAACATGACCTTGGCTTCTCAGATATGGAGCACTTCTTCCTTCCTTTGTTATGGAATTCTGTCTTGCTGTATCTTCTATGCAACTCCTTTCCTAATGACCCCCAGTGGCTGCGGAGTGCTCTCCAGCATTCTGCTCATCCTCATCGCCTTGCTGTGTGGTTGAGGTGTACCGGCTTTGGGTGTGCCTCTTTTCTCTCTCTGGTTGCCTCACCCAATTTACCTGCCGTCCCCTTGGTTTGTAAACTGCCTGCATTTACTCTTGTCAGCCAACATGTACAAATGTAAGAAAGAATTTTTAAACAGGTAATAAATTATATTTATAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921:ENSMUST00000106236:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(33.8=45.0)
A:
NA
C2:
PF0053117=Death=PD(65.0=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCTCTCCCTATCCGGCA
R:
TCCTCCTCAGATGTGGTTCCC
Band lengths:
342-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types