BtaINT0157581 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30736049-30739264:+
Coord C1 exon
chr6:30736049-30736399
Coord A exon
chr6:30736400-30739176
Coord C2 exon
chr6:30739177-30739264
Length
2777 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
Exon sequences
Seq C1 exon
ACTCAGATCTCCTGGCAGTACCCCCAGACCTCACATCAGCCGCGGCCATGTACAGGGGACCTGTTTATGCCTTGCATGATGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGATCCACTGCCTAACCTGAAGATCAAAGTGTACAATACCTCAGGTGCTGTCACGCCCCAAGATGATCTCTCTGAGTTTGCATCAAAACTGTCCCCTCAGATGACCCAATCCTTGTTGGAGAATGAGGCCCTCAACCTGAAGAATCAGAGTCTAGCACGGCAGACAGACCCCTCCTGCACTGCGTTTGGCACCTTCAACTCCCTTGGGGGTCACCTCATTATCCCCAACTCAG
Seq A exon
GTAATTCCTCAAGGTGTTTATGTTGCAGAGGTAGATCTGGGAAACCTATCTTTATTATTTGTTTTCATTAGGCCTGAAAAGTTAAATGTATCCTATCTAATCCAAATCTATTGTTACTTTCAATGTAAAACAAATAGTACTTCAGTCAAGATCAGCAAAACTGTTTATCTTCCTCTAGCCAACTCTGAAAACACTTCCTCTAGAAATATTGCACTTACAACTTTCTGCCGAGGCATAACTTACGACTGCCATTGACCTTCTTTTTAATAGCCCTTCAGAGGCAGCATTAAGCCAAAAGCAAAAAGCCTTCACTGTTGTCATCACACTTTAAAAGGACAAATTAATTAGAAAACGTATCAGTTGGTTCAGTTCCAATTTCCTACAGGAAGCAGTACTTCAGAATACGAAATTAGATGATCAGAGGACATGATATTAGACATCAACTCTTCATTAATTCTTTTTTACACAGTCTTCAGGGTCAAGGTATTTCTAAGGTATGCACTCCACATAGCTTCATCATGTGTCTCTTTAAGGTAGGATTAAAGTAGTGCCTTTTAGTAGTATTCAGTTTTCAGTTCATTTAGTTATCTGCATGTAGAGAGTAAGCTCCATAAAGCTCTTAAATGGTGAACCAAAGTTAGTGACTCATAATGTTTGCTTAAAGTTTGGTGTTTATTCATCACTATGGAGCCATCAGTTATGAGAGGGTTAATGGACTCCCTGTGCATGTCCAGGCACTCTTTTGGGCCAGATAGAGTAGTCTGTGAACACAGAAAAAACCAGTTTGAACTAAGATCTATACATAGCATAAGAAGCGAATGTAGTGTGTAAACAGCCATAGAGCCAAGTAATATAGAGAACCGATTGAACTTGTCTTTGATTCTTCCTCTCATTCAGTCCCCCATTTCAACACCTCAGCAATTTTTCACCCCATGCCTTTTAAAAGTGTACTTTAATAAATTGAAATATTTAATGGAATATCATTTTTCCTTTTCTAAAATACATTTCACAGAGCTGAGATCACACATTACATAAAGTGCTTTTATTCCAATCTTTCTCATTCCATGCAATTGCATGCTTTTTAAAATCATGATTTTAAATATGTTGTAATAGTCTGCAAATGAATAGATCAGAATATACTCTACTGTTTTTTCCTTGTTTAAACATTGTATTATTTCCAAGACAGTTTTTTTTTTTCATGGCAGCCAGTGGATTATACCTCTCCTTTCCATTTCTACACTTGTCACTTTTTCACATATGAATTATTTTAAAGGCTTCTTAAGTAGAAAGGAGAGAGCCAGCATGTTTAAATATGTACTGGGCAATGGTGATGTACATGCATTATTTTATTTACAGTAATCTAATATGTCTCAGGCCTTATTCTTGTTACTTTGCATCCATAATTCTGTCTCATCCCCTTAACAAACATAAAGGTACATTTGATTGTTCCCATTGGAAAAAAAAAAAATACCGAGGCTTGAGTGCCTCATGTGTGGTCTTCCTCCTTTCATTGTGTGCCTCAGCAAACCATCCTGATGTCTGATGTGAGCATGACATTCTACTTCCTGCAGCACGACAAGGTGCACATTACGCCTCAACAGTTGCAACCAGCTATACAAAGGGCTTTGACTAACTATTCCTCTTTAACTCTGTCCTTTACTCTTGAGACCTTCCAATGTAGTCAAGCAATTTCCTTATGGTCCTGTGTTCATATGGCATATTCCATTTCCTTGCTAATTAGATAAGCTACTCAAAGACAAGAACACTGTCTTTTACTTCTTGGCATTCACAACCCATGAAAAACTCTACCCACAGTCAGGTTCCATAAAATGTTTTATAGAGTTGAGATCCGTTGCATTTATTAGAATAGAATTGTGGAGGCAAGTATCTTCAGGTTGCTGCCCACTTTGAATTACTATCTGTGATAATGCTACACGGGTACAAGCCCATGGTTCCTACGGTGTGGTCCACTGATCGCCAGCATTGGCGTCACCTTGAGACTTGTTAGAACTGCAGTTTCCACAGACCTTCTGAATCAGAAACTCTGAGGGTAGGATCCCATAATGTGCACTAGCAAAACCTTCAGGTAATTTTGCTGCAAACTAAAGTTACAAACCATTACTGTCAGCACAGTTGACTTAGAACAGAGCTCAACCCAACAGTCCTACAAAATGCACCAATTAACAACTAAGTAAAAACCTACTTGGCCTGCTGTGACTAAAACTAGCTCGGTTGCTGTTCACTTTCTAGAGTTACCTATGATGAAAGAAGTTCTTCACCAATTATTTGTTGCAGAAAAACACTGATGCTAACCAGATACTTCAGAAATAAATGTTTTTTGGTATTGTTGAGGTTAGCATTTCCCTGACTTTGAGTCTTGTGGGGATTTTTTTTTTTTTAATTAGAAACGATGCATCATTACAGCTGTTTGAAATTTTAAGAGCAGTTGTTGGTTTTCCCCTCATTTTACAAGGAAAACACCAGTGGAACCATCTGTCTAGTCCTTAAATAAAGCAAGAGTTTTTTAAAAAAATGACATCATTCCTTTAAGTGATTCCATAACAGTTCAGAGGGAGCTGTGGTAACAAATAAGGCCAATAAGGGAGGAAAGCCGGGTGGCTATGAATATTTACATGTCTTTAGAGAGAAAGCAGCAGGCTTATGGCGATGTGGCCACAAAATCTCCTCATTCCTCTCCACTTGCTTCAAAGGCATTCTGTGAAGTTTCCTTTTGATTCATAGGTCTTATGTGACTGCTTTTCTCTTTTGCTATTCAG
Seq C2 exon
GAGTAAGTTTGCTGATTCCCGCTGGGGCCATTCCCCAAGGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084:ENSBTAT00000039753:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=17.8)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]