DreINT0171867 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29080618-29082140:+
Coord C1 exon
chr13:29080618-29080980
Coord A exon
chr13:29080981-29082052
Coord C2 exon
chr13:29082053-29082140
Length
1072 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTCCCCTTTTCTGCTGTTAGGGG
3' ss Score
7.8
Exon sequences
Seq C1 exon
ATAATCCACACCTCCTGCATCCAACAGCTCCGCCTGACCTCACAGCCAGTGCCGGAACTTTCCGCGGGCCACTTTTCTCCTTACAACAGGCTACACTGGACTCGCACCACAAGATCCCCATGACCACGTCTCCTTTGCTTGACCCTCTTCCCAGCCTGAAGATAAAGGTGTACAACTCCTCTACCATGTCCTCCTTGGAGCTGCCGACCGGCCTGGGGTCTGTTGACGGGGATATCATGAGCTTGAAGACTGTTGGCTCTGGACCTAAAGATCATCATGGCCACACGCTGCCCAGGGAGCCCAGTCACAGCGCCAGTGCCACGCTGGGCTCACTGGGTGGCCGTCTCACCATCCCTAATACAG
Seq A exon
GTAAAAGGATTTCAAAAAGCTGGATTTTACCTTTTTATAGCCAATTATTTGATTTTGTCACATATGGTTGTCAAGTCCACTTATGTTAAATGAATGAATGAATCAATCAATCAATCAATCAATATAGATCGCTAGAAGTTTAATTTTGCCTGTCAAGACCTGATTCAGGTAAATCAGGTCATAATAACTGCTTTCAGCCACTTTATTAATGTTATGTAAGAAGCCAATCGTGCTATTCTGAAATATTACAATTCAGAAATTTCAGCAACATTACTCTAGTCTTCAGTTTGTACGTTTACAAGGACACCATTAATCTGATTTTAATGTGATTAAGACTATTCTCTGATTAAGAGTCTACCATATAAACAGTGATTTTTGATTCATTTAATCAGATTAAGGTCATAAATAAACTAAACAGAAATGGAATTAAAACATGTGGATTATGCCAATTGTAGTCGCATTATTGAAGTGCAGTACATGCATGTAAACACTGCAATCAAACTACTGTATTACCGTCATGTAGGATTTTCGCCGCATTTTGAAACAGGATAGTCTATACACACAGGGCTGTTTGACACAATTCTCTTCATCTACCGAGTCAGTGAAGGACCACAGACACCTGCATTGCAAAACAAGAAGGTTTTTACTCCCATTCGGCATGCGGTGTCAACTTCCATTAAAAACTACACTCTTCCACCATAAAAGTGAATTTGCCAAACAGCAAGTAAAATCGACACATTAAAAATGAAACACCTGAAATTATATGAAACTCCGTGTATGAGTGTGAATGAGTGTGTGTGAACAGTTCCCAGAGATGAGTTGTAGCTGGAAGGACATCCGCTGCATAAAAATGTGCTGGATAAGTTGGCGGTTCATTAATAAAGGGACTAAGCCGAAAAGAAAATGAATGAATGAATGAATGAATATCTTTTACTGTTCTAAAATATCTGCAAACATTTTATAGCTGTATTTCTCATATTACAGTGCAGAGCTAATTTAACTACATATTGAATCTGTTAAGTTAAAAATACATGTCTATTATTCTTCCTCTGCTCCCCTTTTCTGCTGTTAG
Seq C2 exon
GGGTAAGCCTGCTGGTTCCACCCGGGACGATTCCTCAGGGCAAGTTCTACGAGATGTACCTCATTATCAACAAATGGGAAAAAACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(19.4=16.5)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCCACTTTTCTCCTTAC
R:
TCGTAGAACTTGCCCTGAGGA
Band lengths:
352-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]