GgaINT0042391 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12867925-12868497:+
Coord C1 exon
chr6:12867925-12868314
Coord A exon
chr6:12868315-12868406
Coord C2 exon
chr6:12868407-12868497
Length
92 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
TAACGCTGTGTGTGCTGCACTAG
3' ss Score
-2.6
Exon sequences
Seq C1 exon
ACAACCCCCAGTTACTGCACCCCTCCATGCAGCCGGACCTGACGGCCAACGCAGGGGTGTACCGGGGCCCCATGTATGCCCTGCAGGACTCCTCTGACAAGATCCCCATGACCAACTCCCCCTTGCTTGACCCACTCCCCAACCTCAAGATCAAGGTCTACAACTCCTCCACCACCTCCTCTTCTCCGGGGCTGCACGATGGGACGGATTTGCTGGGGGGAATTCCCGCTGTCGGCACCTTCCCAGGGGACAGCAGCAGCCAATTTGTGAACATGAGGAACAAAGCCCAGCAGGGCTCCCAGCACCTCCTCAGCCTGCCTCGGGAACATGGCACCAGTGCCAGTGGGACTTTCAGCTACCTGGGGGGAAGGCTAACCATCCCCGGCACCG
Seq A exon
GTAAGCTCCATGCAGGGGAAAAGTGTGCTTTGGGTGTAAGATAACCAAGGGATTGCTCCCTCGTTTGGGGCCTAACGCTGTGTGTGCTGCAC
Seq C2 exon
TAGGGGTGAGCCTGCTGGTGCCGCATGGAGCCATCCCGCAGGGAAAGTTCTACGAGATATACCTGGTCATCAACAAGGCAGAGAGCGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=16.0)
A:
NA
C2:
PF0079115=ZU5=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAACAAAGCCCAGCAG
R:
CTCGTAGAACTTTCCCTGCGG
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]