RnoINT0160599 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30351095-30351978:-
Coord C1 exon
chr20:30351589-30351978
Coord A exon
chr20:30351183-30351588
Coord C2 exon
chr20:30351095-30351182
Length
406 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGGCCTCTCTTCCTCCCTAGGGG
3' ss Score
12.46
Exon sequences
Seq C1 exon
GCAACCCACAGCTCCTGCACCCATCCGCCCCTCCGGACCTAACGGCCAGTGCTGGCATCTACCGCGGACCTGTGTATGCCCTGCAGGACTCCGCCGACAAGATCCCTATGACTAATTCACCCCTGCTGGATCCCTTGCCCAGCCTCAAGATCAAGGTCTATGACTCCAGCACCATCGGCTCTGGGGCTGGCCTGGCTGATGGAGCCGACCTGCTGGGTGTCTTACCACCCGGTACATACCCAGGCGATTTCTCCCGGGACACCCACTTCCTGCACCTGCGCAGCGCCAGCCTCGGTTCCCAGCACCTCCTGGGCCTCCCTCGAGACCCCAGCAGCAGTGTCAGTGGCACCTTTGGTTGCCTGGGTGGGAGGCTGACCATTCCCGGCACAG
Seq A exon
GTAGGCCTCCATCTGGTTCCATTGCTCAGATGGGAAATGAAAGCCAGGGAAGTCTTGGGTCAACCACTTGGAGGGGGTCTCACTTCCGTTTGGGTTGAGAGTGGTTCTTATCATTAGTCCCACAGAGCAGCCCTGGCTTTAACTGGCAGCAAGGCTCTTGTCAACTTGTGAAGTAGAGACTGGCAGCTTTTCAGAGTCCTGTCCCAAGCCAGAGTGAGGCTAACACTGGAGGCTCTGACCCCCCAGCAGTGTTAGGCCACTGTGTTCCTGCCCAGGGCGCTGGTGCTCCCTGTATCTCCCCCACCCCCCATCTCGAGTCTTTCCCTTCCCTAAGTTGGAACCAGAGCCTACCCCATCCTTCTCATCCCTACTGGTGACCTTCCTGATGGCCTCTCTTCCTCCCTAG
Seq C2 exon
GGGTCAGCCTGTTGGTACCAAATGGAGCCATTCCCCAGGGCAAGTTCTATGACTTGTATCTACGTATCAACAAGACTGAAAGCACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=16.0)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCGCGGACCTGTGTAT
R:
TTTGGTACCAACAGGCTGACC
Band lengths:
356-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]