BtaINT0157554 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27591960-27593061:+
Coord C1 exon
chr28:27591960-27592349
Coord A exon
chr28:27592350-27592973
Coord C2 exon
chr28:27592974-27593061
Length
624 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGACCTCTCTCTCCCGCTAGGGG
3' ss Score
12.41
Exon sequences
Seq C1 exon
ACAACCCACAGCTCCTGCACCCATCCGTGCCTCCTGACCTCACTGCCAGCGCCAGCATCTACCGCGGGCCAAAGTATGCCCTGCAGGACTCAGCCGACAAGATCCCCATGACCAACTCGCCACTGCTGGACCCACTGCCCAACCTCAAGATCAAGGTCTACAGCTCCGGCACCACTGGCTCTGGGCCAGGCCTGGCAGACGGGGCTGACCTGCTGGGAGTCCTGCCTCCCGGCACGTACCCTGGTGACTTTGCCCGGGACACCCACTTCCTGCACCTGCGCAGTGCCAGCCTCGGCTCCCAGCAGCTCCTGGGCCTGCCCCGTGACCCGGGGAGCAGTGTCAGCGGCACCTTTGGCTGCCTGGGCGGGAGGCTCAGCATCCCCGGCACAG
Seq A exon
GTGGGTCCCTGCTCTGCTTGCCTGTCAGCCTGGCCTCGGCATGTTCCCCTCTAGGTAGTCCAACACTCACCCAGCTGAAAATAGGACTTCCTGGTCCCATTTCACAGACATGGGAAGTGAGGCCCAAAGGGATAAAGTGATGATAAAATGAAGACCTGGGGTCCAGGCCTGCCTCTGCCTCGCTAGGGGAGGGGAACTCTCTAAACCTCAATTTCACTCTCGAGTAAGTGGGAAAGAATACTGCCATGTAGTCAAGAAACCAAAGGGTGCTGTTGAAAAGACAGGGCCGCCCAGCTCAGGTTGCACAGCCAGCAGATGAGTTTCCCCGTGTCATACCCTGAGCTAGGCTGGGGCTGGAACCACCCTTTCAGCCTCCAGGACTTTGGCCTATCTCTATATCCCATTGCAATGCCTCCCCTGTGCGGTCCCTCTGGACAGCCCTGCCGTGGCCAGTGATCTGGCCTTTCCTGGCACCCAACCGCTCTCCCCATGCCCTGCTGGTGACCACCAGGATCTCAGAAGATGTCTTTTTTTCCCTATTCCAAGCGGGAGGCCAACCCCCCATCCCCTGTGCTAAGCTCCTGGACTCCTAGCCCCTCCCTACTGACCTCTCTCTCCCGCTAG
Seq C2 exon
GGGTCAGCCTGCTGGTGCCCAATGGAGCCATCCCCCAGGGCAAGTTCTACGAGATGTACCTCCTCATCAACAAGGCAGAAAACACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=16.0)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAAGATCCCCATGACCA
R:
TCTCGTAGAACTTGCCCTGGG
Band lengths:
351-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]