GgaINT0042391 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11356670-11357242:+
Coord C1 exon
chr6:11356670-11357059
Coord A exon
chr6:11357060-11357154
Coord C2 exon
chr6:11357155-11357242
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
CGCTGTGTGTGCTGCACTAGGGG
3' ss Score
6.46
Exon sequences
Seq C1 exon
ACAACCCCCAGTTACTGCACCCCTCCATGCAGCCGGACCTGACGGCCAACGCAGGGGTGTACCGGGGCCCCATGTATGCCCTGCAGGACTCCTCTGACAAGATCCCCATGACCAACTCCCCCTTGCTTGACCCACTCCCCAACCTCAAGATCAAGGTCTACAACTCCTCCACCACCTCCTCTTCTCCGGGGCTGCACGATGGGACGGATTTGCTGGGGGGAATTCCCGCTGTCGGCACCTTCCCAGGGGACAGCAGCAGCCAATTTGTGAACATGAGGAACAAAGCCCAGCAGGGCTCCCAGCACCTCCTCAGCCTGCCTCGGGAACATGGCACCAGTGCCAGTGGGACTTTCAGCTACCTGGGGGGAAGGCTAACCATCCCCGGCACCG
Seq A exon
GTAAGCTCCATGCAGGGGAAAAGTGTGCTTTGGGTGTAAGATAACCAAGGGATTGCTCCCTCGTTTGGGGCCTAACGCTGTGTGTGCTGCACTAG
Seq C2 exon
GGGTGAGCCTGCTGGTGCCGCATGGAGCCATCCCGCAGGGAAAGTTCTACGAGATATACCTGGTCATCAACAAGGCAGAGAGCGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=16.0)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGAACAAAGCCCAGCAG
R:
CTCGTAGAACTTTCCCTGCGG
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]