HsaINT0177861 @ hg38
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
Coordinates
chr10:71291432-71292554:+
Coord C1 exon
chr10:71291432-71291821
Coord A exon
chr10:71291822-71292466
Coord C2 exon
chr10:71292467-71292554
Length
645 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACTTCCCTCTCCCCCTAGGGG
3' ss Score
13.4
Exon sequences
Seq C1 exon
GCAACCCGCAGCTCCTACACCCCTCTGTGCCTCCTGACCTGACAGCCAGCGCCGGCATCTACCGCGGACCCGTGTATGCCCTGCAGGACTCCACCGACAAAATCCCCATGACCAACTCTCCTCTGCTGGACCCCTTACCCAGCCTTAAGGTCAAGGTCTACAGCTCCAGCACCACGGGCTCTGGGCCAGGCCTGGCAGATGGGGCTGACCTGCTGGGGGTCTTGCCGCCTGGCACATACCCTAGCGATTTCGCCCGGGACACCCACTTCCTGCACCTGCGCAGCGCCAGCCTCGGTTCCCAGCAGCTCTTGGGCCTGCCCCGAGACCCAGGGAGCAGCGTCAGCGGCACCTTTGGCTGCCTGGGTGGGAGGCTCAGCATCCCCGGCACAG
Seq A exon
GTGAGCCCCTGCCCTGCTTGTGCGTCAGCCTGGCCTTAGCACCTCCTCTGTGGACTGCCCCAACACCCATCCAGCAGAAGATAGGGCTGCCCTAATCCCATCTCACAGATGGGGAAAGGGAGGCCTGAAGGCAGGAAGTGAGTATAAAATAGAGAGGTCTGACTAGAAAAGCTAGGCTTCAAGCCTGCCTATGCCCTCACTAGGGCAGAGGAACCTTGGGCCAGCCATCTTCTAAGCTTCAGTGTCTCTGTTGTGTGAGAGAGAATATTCCAACGTAGTTCAGCAGACCTACAAAGCACTGTCCTGGAACTAGCAGCAGAGGGACAGGGGCGCCTGTTTTAGTTTGCAAAGCCAGCAATTAACAGCTTCCCAGCATCATATACTAAGCTAGGAGTAGAGCTGGCACTTGGACCTCCAGACACCATAGCAATGTCAGAGACCCCTGTCTTCCTAGACAAGCCAGCACTGGTCAGTGGCCTGGCCTCTGCTTGCATCCAGTCCCCAGACCCTGTCTCCCACCCCTGGCTGGGGACTACCTGGAGCTCAGGAGATATCTTTCTCTCCCAGCCCCAAGCTGGGGCCAACTTCCCAAACACTTGTTCTCCTAAGCTCCTGGACTCCCTGCTGACTTCCCTCTCCCCCTAG
Seq C2 exon
GGGTCAGCTTGCTGGTGCCCAATGGAGCCATTCCCCAGGGCAAGTTCTACGAGATGTATCTACTCATCAACAAGGCAGAAAGTACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731:ENST00000373192:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=16.0)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCACCGACAAAATCCCC
R:
TCTCGTAGAACTTGCCCTGGG
Band lengths:
358-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains