RnoINT0160626 @ rn6
Intron Retention
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247352340-247354314:+
Coord C1 exon
chr2:247352340-247352684
Coord A exon
chr2:247352685-247354226
Coord C2 exon
chr2:247354227-247354314
Length
1542 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATCTCCTGGCAGTACCCCCGGATCTCACCTCAGCTGCAGCCATGTACAGGGGACCCGTCTATGCTCTGCATGATGTCTCAGACAAAATCCCAATGACCAATTCTCCAATTCTAGACCCACTGCCCAATTTGAAAATCAAAGTGTACAACAGCTCAGGTGCTGTCACTCCTCAGGACGACCTTGCTGAGTTCTCATCCAAGCTGTCACCCCAGATGACCCAATCCTTGCTAGAGAATGAGGCCCTGAACCTGAAGAACCAGAGTCTCGCAAGACAGACTGACCCATCCTGCACAGCGTTTGGCACCTTCAACTCCCTGGGCGGTCACCTCATCATCCCTAATTCAG
Seq A exon
GTAAGTCCTGAAAGTTTAAGTGACAGAGATGCAGCTTGAAGCTATACTGGAGTCTCTAAAATCTTACCTCTGCTCATATTGGATCTGAAACATTCGATATAGTCTACCTCAAATTTCCATTCAGTAAATCTCAACCATTATTTCATATAAAATCTGTAAAACATTTTAACCTCCTCCAGCTAACTCTGAATTTAGTTCCTCTAGAAAAAAAACTTTCTGCTGAGATGGAGTTCAGAACTGGCACCAACTACCTTCAAGGCATATAATGAACCCAGGAACCCTCAGTGTATTTCCTATGCTTCAATGCAATCAGTTGGTCCAGTCCAATGTTCTCCAGGAAGCTATATTTCAGTGAACTATTTCATAAATGATTAGAAATATAACAATAGACCCGAAATCTTCATTTATTAATTCATCCAGTATATCATTCAACCAGAGAGCATCTATACAGTATTTATTACAGTCTATGATGTATTGACCTACAATTTCAACTTTATCCAATGTCCATTTGTAGTTTCATTTGTTTTTAAGTTTATTGAATAGTTTAGAGGTATCTAAAGAATAAAAAACACAGTGCCCTTCTAGAAAGAACTTAGGTCAGTGACTGCCAATGTTGACAGTTGAAATTTACTTTTAGCAGTACTGATGGACTTGAAACCCTAGATTATAAGACAGATAATGTCTGATTTCAAAGTCTAGCATGACTATTTGGGACAAGGCTGGGAGTATTATTCAAAAAAATGACAAAAGTGACTTCACTGACCTATTTTGTTAATGTCATGTACAATTATGTATTATGCACACATGCATGCCTACATACACATGCCTGCACATTCTACAAACAAAAATTTCCACTATGGGTTTGGAACCAGGATTTCCAGGTGGTCTTGACACTGGCTCAGATAGTCACAATGTTGTCCGAGGCCAACCTTCCACACAGCTCCTACCAATGATCCCTCATTGGCCCACTTCACATAAATGAGAAGCACCGTGACATGTTGCAGCTAAGTAGGATCTTGTTGCTCACTTCCTAGAGTTGTGTATAACAAATCATTCTTATCTCTAACTCTGCTGTGAAATAACACTGATGCTCGCCAGATATTTTAGAGGAAAAAAAAGTTTTCTGATATGGCTGAGGTTAGCATTCCCCTGACTTTGGATTTCATGGGGAGCCTTTTTTTTTTTTTAATCAAAAACAATGCATCTTTGCAGCTGTTTAAAATTTTAATAGCAGTTTTTGGTTTCCCCTCAATTTACAAGAAAAACAACAGTGGAACCATCTGTCGATTCCTTAAATAAAACACGAACTTTCAAAATGACATCACTCTCTTAAGTAATTCCATAACAGTTCAAAGGGAGCTGTGGCAGAATGCAAGCCCAGCAAGAAGAGAGGGCAGCAATGGGTCTTTACATGTCCTTAGGGAAAATGTAAAGACTACATAGGAACCAAATCTCAGTCCTTTTTGCATGCTGCAAAGGCATTCTAGAAGTTTCCTTTTGGTTCACTGGTCTTATACAGTACTTTTCTCTTTTGCTATTCAG
Seq C2 exon
GAGTAAGCTTGCTGATTCCCGCTGGGGCCATTCCTCAGGGGAGAGTCTATGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071:ENSRNOT00000050330:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.142
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCTGCAGCCATGTAC
R:
CAGCGGGAATCAGCAAGCTTA
Band lengths:
342-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]