HsaINT0177890 @ hg19
Intron Retention
Gene
ENSG00000182168 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:12569]
Coordinates
chr4:96137275-96140464:-
Coord C1 exon
chr4:96140120-96140464
Coord A exon
chr4:96137363-96140119
Coord C2 exon
chr4:96137275-96137362
Length
2757 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATCTGCTGGCTGTACCCCCAGACCTCACGTCAGCTGCAGCCATGTACAGAGGACCTGTCTATGCCCTGCATGACGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGATCCACTGCCCAACCTGAAAATCAAAGTGTACAACACCTCAGGTGCTGTCACCCCCCAAGATGACCTCTCTGAGTTTACGTCCAAGCTGTCCCCTCAGATGACCCAGTCGTTGTTGGAGAATGAAGCCCTCAGCCTGAAGAACCAGAGTCTAGCAAGGCAGACTGATCCATCCTGTACCGCATTTGGCAGCTTCAACTCGCTGGGAGGTCACCTTATTGTTCCCAATTCAG
Seq A exon
GTAATTCCTAGAGGTTTAAATTGCAAAGAGGCAGCTTGAAACATATTTTTCCATACCAAAATCTTTTTTGTTCGTGGGATGTTTTCATTAGGCCTGAAATGTTAAATGTGACCTATCCAGCCCAAATCTACTTTCAATGTAAACAGAACATTACTTCAGACAAATCAGCAAAACCATTTCTCTTCCTCCAACTAATTCTGAAAACACTTCCTCTAGAAATTCTATACTCACAACTTTCTGCTGAGGTGTAATTTAGAACCATCATTGACCTCCTTTTTACTAGAACTTCAGAAGGCAACATCAAGCCACAAGTCCTAATGTTGTCATTATACTTTAAAAGGACGAATTAATTATTAAATATATCATTTGATTAAGTTCCAATTTACTACATGAAGCAATAATACAGAAAACAAATTTTTTGATCATCAGAGGTATCATAATAGACATCAAATCTTCATTTATTAACCTAACTTGATCACACAGTCTTTCACCTCACAGTATTGATAGTGTACACTGTACTCACTCCTACCTCTGATATTTGTATCCAGAATCACCAGATTCATCAGGTGTGCTTTTGTACTATTACTTGGTTTCAGTTTATTATGTAGTTTCTCTGCATCTAGACAATAAGCCTCATAAAGGTCTTTCATGGTGAATGAAGGTTAATGCCTGATACTGTTGGATTAAAAATCGATATTCATTAATCAATATTAGTAATGAGCTTGGAACCATGGGTCATAAAAGGGTTAATGGCTTCCTCTCTAAATCTATCTAATTCTTTTGGGCAAGGCTGTGAGTATTTTGTAAATACAGTAATACCTAAAATGTAAATACCTAAAGTGTTGTCACATTGAAAAAACATAATATGTGTATACTCAAGGAATATACAGACCAAAGAGTCTTCAGGCCTGAATATGAAATTTTATTTGATTCTTCCTGTCATTCACTCTTTCATTTCAATGCCTTGGCAACTTTTACCCTAAACCTTTAAAAGTATATTTTAACAAAATCAAAACATTTAATAAAATATTTTTTTCTTCACAGTTTACATAGCTGAGATCATGTATTATATAATGTTTTCCACCCTTTTCTCATTAATCCTCATGCTATTGCATGCTCTTTAAAATCATGATTTTAAATATCTTTATAACAGTCCATTATTGAATGAATCAAAACATACTTTAAGGTTCTTCCATTGTTTAAACATTACAATTGTTCTCAAAATAGTTCTTTTCCCTCTGAAATGTATTGGATTCTGCCTTTTCTTCCCATTTCTACCTACCACTTTTTCATATGTGCATTATTATAAAGGCCTCTTAAGTGGAAGGGAGTGAGCTAGCATGTTTTAAATTCTTCCTATGTATTAGGCAATGGTGATCAACATATGATATTTTATTTAATGGACAAACAATAGTTACCTATTACTTTATATTCATAATGCTGTTTCATCCCTATAACAAAGATTAAGGTATGTTTTATGTTTTCAATGAAAAAAATAAAAGCACTGAGGCTTGGTAGCCTCATGTGTGATCTTCCTGCTGTGTCCTCCACAAATCATTCTGTACATTGACAGTCCACTTCCTACAACACCAGGGCTCTCACATTACTCTCCTTCTCAAGAGGTCTGTGGCTCAACATCTTCAACCAGTTACATGAAGGCCTACTACCTCTTAACTCTCCATTCTTTTTTCTTGAGACTTTCCAGTGTGGTCAGGCAAGTTTTCATATTGCCCCACGCTCATTTGGCATATTCCATTTCCTCGCTAATTAAATTATGAATTACTCAAAGACAGGAAGACTATCTTTTCCTTTTTGAAATTCACAACAGTGTCAAACACTGTACTCACAAGGATGCTTCATAAATTTGTATGGAGCTGAAGGAAGCTGGATTTTAGGGGAATCAAATGATGGAGCCAAACATCTTTGGAGTGCTGTCCACACTGAATCACTCTTTGTGATGATGAGCAGTGGTGTGGGCCCCAGACCATCACCATGGGCATCACCTGGCAACTGGTTGAACTAAAAAATCTACCCCACACCCCATATCTCTGAATCAGAAACTCGGGGTAGGGACCAGTAATCTGTGGTTTAACAAGCTTTCCAGGTGGTTCTGACCTGAGCTCAAATTTGCAAGCCACTGCCACAGCAGACACAGTTAGCTTAGAACACAGCCCAATCTAATAGTTCTGCCAAAGGGCACCGATTAGCAACTAACTAGAAACGCTTTGACCTGCTGTGACTAAACTAGGAGTTAGTGTTCACTTTCTAGAGTTATGTATAATAAAAGGTCTTCACCAATTCTTATACCATTGTGGAATTACATTGATGCTAACCGGATATTTAAAAAATACATGTTGTTTTTTTTTTTATGTTGAAGTTGGCATTTCCCTGACTTTGAATCTTGTGGGGATTTTAAAAAAAAATGGAAATGATGCATCATTACAGCTGTTTGAAATTTTGAGCAGTTGTTGGTTTTCCCCTTGTCTTGCAAGGAAAACAACAGTGGAACCATCTGTCTGTTCCTCAAATAAAACAAGAGTTTAAAAAGTTACATCATTCCTTTAAGTAATTGCATAAGAGTTCAGAGGGAGCCGTGGTAAGGAGGCCAATGAGGAAGGAAAATGGAGCAACTCGGAATATTTACATGTCTTTAGAGAAAATGAAGCAGGCTTATGGCTGCGCGGTCACAAAATCTCCTCATTCCCTTTTACGTGCTGCAAAAGTCTTAAATGACTGCTTTTCTCTTTTGCTATTCAG
Seq C2 exon
GAGTCAGCTTGCTGATTCCCGCTGGGGCCATTCCCCAAGGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAACTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168-UNC5C:NM_003728:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)