HsaEX0069383 @ hg19
Exon Skipping
Gene
ENSG00000182168 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:12569]
Coordinates
chr4:96127779-96140464:-
Coord C1 exon
chr4:96140120-96140464
Coord A exon
chr4:96137275-96137362
Coord C2 exon
chr4:96127779-96127947
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCTGCTGGCTGTACCCCCAGACCTCACGTCAGCTGCAGCCATGTACAGAGGACCTGTCTATGCCCTGCATGACGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGATCCACTGCCCAACCTGAAAATCAAAGTGTACAACACCTCAGGTGCTGTCACCCCCCAAGATGACCTCTCTGAGTTTACGTCCAAGCTGTCCCCTCAGATGACCCAGTCGTTGTTGGAGAATGAAGCCCTCAGCCTGAAGAACCAGAGTCTAGCAAGGCAGACTGATCCATCCTGTACCGCATTTGGCAGCTTCAACTCGCTGGGAGGTCACCTTATTGTTCCCAATTCAG
Seq A exon
GAGTCAGCTTGCTGATTCCCGCTGGGGCCATTCCCCAAGGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAACTATGAG
Seq C2 exon
GCCACCCATGGATGACTCTCAGACACTTTTGACCCCTGTGGTGAGCTGTGGGCCCCCAGGAGCTCTGCTCACCCGCCCAGTCGTCCTCACTATGCATCACTGCGCAGACCCCAATACCGAGGACTGGAAAATACTGCTCAAGAACCAGGCAGCACAGGGACAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182168_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.093 C2=0.140
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGCAGCTTCAACTCGC
R:
AGTCCTCGGTATTGGGGTCTG
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)