GgaEX6035205 @ galGal3
Exon Skipping
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60184335-60196024:-
Coord C1 exon
chr4:60195680-60196024
Coord A exon
chr4:60193183-60193270
Coord C2 exon
chr4:60184335-60184503
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCTTCTGTTCTGCAGGAG
3' ss Score
10.15
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
ACCTCTTGGCAGTGCCACCAGACCTCACTTCTGCTGCAGCCATGTACAGGGGTCCTGTGTATGCCTTGCATGATGTCTCTGATAAAATCCCAATGACCAATTCTCCGATCCTGGACCCACTGCCCAATCTGAAGATTAAAGTTTATAACACCTCTGGAGCAGTCACCCCCCAGGATGAACTCTCTGACTTCTCCTCCAAGCTGTCCCCACAGATTACCCAGTCTCTGTTGGAGAATGAGACTCTGAACGTGAAGAACCAAAGCCTTGCACGGCAAACAGACCCATCCTGCACTGCATTTGGGACCTTCAACTCGTTAGGGGGCCACCTAGTAATTCCTAATTCAG
Seq A exon
GAGTGAGCTTGCTGATCCCAGCAGGGGCTGTTCCCCAAGGAAGAGTCTATGAAATGTATGTGACAGTCCACAGGAAGGAGGGCATGAG
Seq C2 exon
ACCACCTGTAGAAGACAGCCAGACGCTGCTGACACCAGTGGTGAGCTGTGGCCCACCAGGAGCGCTGCTGACCCGACCCGTTGTGCTGACCATGCACCACTGTGCTGAGCCCAACATGGATGACTGGCAGATCCAGCTCAAGCACCAGGCAGCCCAGGGACCATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.133 C2=0.140
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCCACCTAGTAATTCCT
R:
CTGGTGCTTGAGCTGGATCTG
Band lengths:
176-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]