MmuEX6074407 @ mm10
Exon Skipping
Gene
ENSMUSG00000059921 | Unc5c
Description
unc-5 netrin receptor C [Source:MGI Symbol;Acc:MGI:1095412]
Coordinates
chr3:141789729-141801447:+
Coord C1 exon
chr3:141789729-141790073
Coord A exon
chr3:141791792-141791879
Coord C2 exon
chr3:141801279-141801447
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTTGCTATTCAGGAG
3' ss Score
9.51
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTCCTGGCTGTCCCCCCTGACCTCACCTCAGCTGCAGCCATGTACAGGGGACCTGTCTATGCTCTGCATGATGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGACCCACTACCCAACTTGAAAATCAAAGTGTACAACAGCTCAGGTGCTGTCACTCCTCAGGATGACCTTGCCGAGTTCTCATCCAAACTGTCACCCCAGATGACCCAGTCCTTGCTAGAGAATGAGGCCCTTAACCTGAAGAACCAGAGCCTCGCAAGACAGACTGACCCATCCTGCACAGCATTTGGTACCTTCAACTCTCTTGGGGGTCACCTCATCATTCCTAATTCAG
Seq A exon
GAGTAAGCTTGCTGATTCCCGCTGGGGCCATTCCTCAGGGGAGAGTCTATGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAG
Seq C2 exon
GCCCCCCATGGAAGACTCTCAGACCCTACTTACCCCTGTGGTGAGCTGTGGGCCTCCTGGAGCTCTGCTGACCCGCCCTGTCATCCTCACTCTGCATCACTGTGCAGACCCCAGCACCGAGGACTGGAAGATCCAGCTCAAAAACCAGGCAGTGCAGGGACAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059921-'14-22,'14-14,20-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.133 C2=0.158
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTCTTGGGGGTCACCTC
R:
TGGATCTTCCAGTCCTCGGTG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types