BtaEX6030436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002084 | UNC5C
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr6:30736049-30749739:+
Coord C1 exon
chr6:30736049-30736399
Coord A exon
chr6:30739177-30739264
Coord C2 exon
chr6:30749571-30749739
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACTCAGATCTCCTGGCAGTACCCCCAGACCTCACATCAGCCGCGGCCATGTACAGGGGACCTGTTTATGCCTTGCATGATGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGATCCACTGCCTAACCTGAAGATCAAAGTGTACAATACCTCAGGTGCTGTCACGCCCCAAGATGATCTCTCTGAGTTTGCATCAAAACTGTCCCCTCAGATGACCCAATCCTTGTTGGAGAATGAGGCCCTCAACCTGAAGAATCAGAGTCTAGCACGGCAGACAGACCCCTCCTGCACTGCGTTTGGCACCTTCAACTCCCTTGGGGGTCACCTCATTATCCCCAACTCAG
Seq A exon
GAGTAAGTTTGCTGATTCCCGCTGGGGCCATTCCCCAAGGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAG
Seq C2 exon
GCCGCCCATGGAGGACTCTCAGACTCTCTTGACCCCTGTGGTGAGCTGTGGGCCTCCAGGAGCCCTGCTGACCCGCCCCGTCATCCTCACTATGCATCACTGTGCAGATCCCAGCACCGAGGACTGGAAGATACAGCTCAAGAACCAGGCAGCGCAGGGACAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002084-'11-20,'11-19,12-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.133 C2=0.175
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=17.8)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCAGATGACCCAATCCT
R:
CCACAGGGGTCAAGAGAGTCT
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]