RnoEX6011764 @ rn6
Exon Skipping
Gene
ENSRNOG00000029071 | Unc5c
Description
unc-5 netrin receptor C [Source:RGD Symbol;Acc:735109]
Coordinates
chr2:247352340-247364010:+
Coord C1 exon
chr2:247352340-247352684
Coord A exon
chr2:247354227-247354314
Coord C2 exon
chr2:247363842-247364010
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTTGCTATTCAGGAG
3' ss Score
9.03
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCTCCTGGCAGTACCCCCGGATCTCACCTCAGCTGCAGCCATGTACAGGGGACCCGTCTATGCTCTGCATGATGTCTCAGACAAAATCCCAATGACCAATTCTCCAATTCTAGACCCACTGCCCAATTTGAAAATCAAAGTGTACAACAGCTCAGGTGCTGTCACTCCTCAGGACGACCTTGCTGAGTTCTCATCCAAGCTGTCACCCCAGATGACCCAATCCTTGCTAGAGAATGAGGCCCTGAACCTGAAGAACCAGAGTCTCGCAAGACAGACTGACCCATCCTGCACAGCGTTTGGCACCTTCAACTCCCTGGGCGGTCACCTCATCATCCCTAATTCAG
Seq A exon
GAGTAAGCTTGCTGATTCCCGCTGGGGCCATTCCTCAGGGGAGAGTCTATGAAATGTATGTGACTGTACACAGGAAAGAAAATATGAG
Seq C2 exon
GCCCCCCATGGAAGACTCTCAGACCCTGCTGACCCCTGTGGTGAGCTGTGGGCCTCCTGGAGCTCTGTTGACCCGTCCTGTCATCCTCACTCTGCATCACTGTGCAGACCCTAACACCGAGGACTGGAAGATCCAGCTCAAAAACCAGGCAGTGCAGGGACAGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029071-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=0.142 C2=0.171
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAGACAGACTGACCCATC
R:
AGAGTGAGGATGACAGGACGG
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]