DreEX0009272 @ danRer10
Exon Skipping
Gene
ENSDARG00000099133 | UNC5C (2 of 2)
Description
unc-5 homolog C (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12569]
Coordinates
chr5:6952773-6964636:+
Coord C1 exon
chr5:6952773-6953129
Coord A exon
chr5:6957001-6957088
Coord C2 exon
chr5:6964468-6964636
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTCTAATGTGTGTTTCAGGTG
3' ss Score
11.36
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CGGATCTCCTGGCCGCAACCCCTGATCTGTCCTCAGCGGCGGCGCTCTATCGTGGCCCAGTTTACGCCCTCCATGACATTTCTGATAAGATCCCGATGACCAGCTCTCCTCTGCTTGAGCCGCTGCCGCTCCCCAACCTCAAGATCAAAGTGTACAACACCTCCGGCACCGTGACCCCTCAGGACGATCTGACCTCTGACCTCTCCGCCACACTCTCCCCGAAGGTCACTCACTCTCTCCTGGATGGCGACCCCATGACCCCTCGCACCCAGACGCTGATGCGGACGCGGGACCCTACATGTACAGCGCTCGGGTCATTCAACTCGCTTGGAGGTCATCTGATCATCCCGAACTCAG
Seq A exon
GTGTGAGTCTGTTGGTTCCAGCTGGTGCGATTCCTCAGGGTCGAGTGTATGAGATGTATGTGAGCTTACAGAGGACAGAAAGCATGAG
Seq C2 exon
GCCACCGGTGGCTGAAGGAGAGGCTGTTCTCAGTGCAGTGGTGAGCTGTGGTCCCGCAGGCGCCCTGTTGACCCGTCCCGTCATCCTCACCCTTCACCACTGCGCACACGCTCACGCCGACAACTGGCGAATCATCCTCAAGAGCCACACGCAGCACGACCAATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099133-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.033 C2=0.018
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(19.4=16.8)
A:
PF0079115=ZU5=FE(28.2=100)
C2:
PF0079115=ZU5=PD(50.5=91.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACTCTCTCCTGGATGGC
R:
CACTGCACTGAGAACAGCCTC
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]