GgaINT0077566 @ galGal3
Intron Retention
Gene
ENSGALG00000012219 | UNC5C
Description
NA
Coordinates
chr4:60193183-60196024:-
Coord C1 exon
chr4:60195680-60196024
Coord A exon
chr4:60193271-60195679
Coord C2 exon
chr4:60193183-60193270
Length
2409 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGTCTCTTCTGTTCTGCAGGAG
3' ss Score
10.15
Exon sequences
Seq C1 exon
ACCTCTTGGCAGTGCCACCAGACCTCACTTCTGCTGCAGCCATGTACAGGGGTCCTGTGTATGCCTTGCATGATGTCTCTGATAAAATCCCAATGACCAATTCTCCGATCCTGGACCCACTGCCCAATCTGAAGATTAAAGTTTATAACACCTCTGGAGCAGTCACCCCCCAGGATGAACTCTCTGACTTCTCCTCCAAGCTGTCCCCACAGATTACCCAGTCTCTGTTGGAGAATGAGACTCTGAACGTGAAGAACCAAAGCCTTGCACGGCAAACAGACCCATCCTGCACTGCATTTGGGACCTTCAACTCGTTAGGGGGCCACCTAGTAATTCCTAATTCAG
Seq A exon
GTAAGTGCTAGCCATATTTCAAGGGTTTAAGTAGAGTTAGCTTTCTTCTATGCCAGAGAAAAACAAGGTCACTCCAGGGAGTTTGCTTTTTCTTTGGTCAGAACAAACAGATGTGTTTTACTCAATCAGCTTAAATAAAATATTTCAAGGTTCACTTTCCCAAAGTCCTGGCTGCCTTTTTAACAGAATGTCACAGGGCTCTCACTCCTTTCTGAGGTATGTTATACATCAGAGTTTCTCCATGTGAAACGTGGTTCAGCATCCTTGACCTTTTTCCTTCGTTCAGCTCTAGATAAGGGACTAAAAGCCAGAAAGCTTCAACCTCAACATCACAAATAAAGAAAACAATTTAATTAAAAAATAAATTGGTTGTTCCACTTCCAATTCTTTGCAGACTGTGCAGTACTGCAGTAGGACAGCAGAATGCTAATTTTTGGAAGGCTTTTTTCCTGCACACCTTACATATTCAAGGAAAATAAAGCCTAAGAGCGTCATGTCCATATCTCTCTCCTTGTTATATATAGCGCTGATTTTTTTTTACAAATAGGAAAGGGAGGAACCAAGCATTGAAGTGCTGCCAGTCTTTCTCATATGTTAAGAGGTTTTTGAGGAAAGCCGTGCTTCTATTTAGTTCATAAATGAAAGGTTTTTATTCAAAGTTTTACACCTGAATGCTCCCATGTGAGACCATATAGCTCATGGTCTCACAGTGTCCAACTTTGCATCTTGTTTTCAGCTCTTGGTCATTTTACAGCACAGTGCCCAGCCTGAGAAAAAACTGCCTAACTTCGTCTCCTGCTTCTTTGCTGGATCCTTTTTTGTTCATTGATGTTATGCAGAAAGCAAAGTGTCTGATTGGCCTAGGACTAGTTTGTTCCTTCCAGGATACAAAACTGTACTGCCCAGGATGCAGCCAAAAGTGGGCCATAAGCAATAGCGTTCCTCTTTGAGGAATGGTGTCTCCTTTTCCCATAGAGCCTAATTGGAAGCTGAACTACTTAAAGACCTCCGGTACAGACTGCTGAGCAATGTTGAAAATTCATGCTATGCTATCCTAGTTTTCACAGTTCTCTAAGATGCAGCTGAGGGTAGGCATTAAGACTCGGGTTTCTTATGTATGTTTCTTTTTATGAAAAAGAAATGCTTATTTATCACTGTAATCTCTTCAGAATTATTAAAACAAGTTTTGGAAGATATATTAATCTGTCTATTGCTCCTGCATACACCTCTGTGCTGTTTCTAGATATATTTATGTATATCCTCCCAGCAAGATGATCAAAGTCCTTCATGTACCCTACACCTGTCTTTACATCTAAGAACATGTACAGGGATGTTGTAACAGTCCTGTGAAGAAACAAGTTAGAAAACCTTAATGGAAAACACTTTCACAGCTAATCCCTCCCATTCAAAGCCAGGTGTGGGACTGATTCCCAGTACAACCCTAGTACATGGGAGGTTTCCAGTGTAACCAAACTATGTACACTGAAGAGAAGAGAGAGGGTTGTAAAGGATTTTATAATAACTCTATTGTGCGTATGCATATATGGAAATAATCTGCCTATAGGTTTGTACTGAGCTACCTAGTCATAGCTGAATTCAAACCCCTGCCAGTGATTCCCCACTAGCCCGCATCTGCACAGACAGCTGGCAGAGCCATGTCCAGCAGCGTGCCAGGGAGTTTCTGAGCCATGTTAGCCATACAAGGACATGACCTCTGGTTCCTGGGGAGTTCCTTGCAATGTGAGAGCACGATTTTGCAATTGATCAGCCCTGAAAAGAGCACAGAGTGTAGTTGCACACATTTTTCAAGGTTGGATATCCAAATTTTGAGTCACTCCACAGAAGCAAGCACATTCAAAATACCAAGAAGCCCCATTTTGTCTCCCTGGTAGCCTAATTAGAAGCTGAGTGCATTAACAAACACGATGCCAGTTTCAGAGCCCATCTTTCAAGAAACAACTAGTTCTTGTAGCTTCCTGGGACAGTACTCCACAGCCTCCCTTTCCTGTTTTTAATTAAATAGGAATTGCCTAGGGAGATATGTCCTGTTACAGCTGTTGGAAAATTTACTCAGAGTTGTTCCCTTTCCATTATTTTACAAGGTAAGAAGCAGTGTAACCATCTGTTTGCTCTTTAAATAAAATAAAAGGGAAGGGAAGAAAATCCTCTTCTCTGCTGCAGCATTTCAGTGCCGAGGCACAAGAGGTGCCAGGGCTGCAGTAAATGCTTTATCTCCACAGTTGCTAACCTCATTTAGAGCCCTCTTGTAAGGCTGGGTGAAAATCTAGCATTGCTAATGTACCTACTGATTCTCCTGTTGCTCTTCTTCAAAGGTTCACCTGGCTTTTTTTTTTTTTTCTGTATTTTTTTTTTCTCCATTTTATCTTTTTTGTCTCTTCTGTTCTGCAG
Seq C2 exon
GAGTGAGCTTGCTGATCCCAGCAGGGGCTGTTCCCCAAGGAAGAGTCTATGAAATGTATGTGACAGTCCACAGGAAGGAGGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012219:ENSGALT00000019955:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=18.1)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]