BtaINT0159544 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104655907-104657342:-
Coord C1 exon
chr11:104657290-104657342
Coord A exon
chr11:104656024-104657289
Coord C2 exon
chr11:104655907-104656023
Length
1266 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CGTCTCCTCCTCTGCTCCAGGTT
3' ss Score
9.91
Exon sequences
Seq C1 exon
CCACCCATCAGCCGGCCGCTGTCCCGGGAGATGGACTACACGGCATACCCCTG
Seq A exon
GTGAGTGGGTCAGCGGGTCCCCTTCGTGCTGGGGGCGTGAGGTCCCTGGCTGCCCCCCGTGTCTCCAGGGTGGCTGAGCCCAGCTGCACGCGGCCCCTTCTCCCCTTCTCAGCTGTGAGTCGCTGGGAAACAGGGAGAATATTCTGTACCCCAGGCAGCTGTTTCCCTGTAACAAACAGATAGATCATCAGGTTAGAACATTAGGAGAAGGAAACCTTTTTTAAATGAGATCTTACTTGAGTATAAAATATAGAAAAGGAGTTGTGAAAGTGTTAGTCGCGCAGTTGTGTCCGACTCTTAGTGACCTCATGGACCGTAACCCGCCAGGCTCCTCTGTCCATGGACTCTCCAGGCAAGAAGACTGGAGTGGGTTGCCATTTCCCTCTCCAGGGGATCTTCCTGACCCAGGGATCAAACCAGGTCTCCTGCATTGCAGGCAGATTCTTCACCATGTGAGCCATGTATTTAAGGCCAAAAGTTATAACTGTATTTACTCACACAGTGCTTGATGAGAGAGGTGGGGCTGTTTGATGAATAAATGTGTGTGGATGTGGGAGGCGTGAGTCTCACGTGCAGGTCGGCCTGGGCTCTAGCTTTTATCACCCCGTCTGCAGGCTCACCCGCTGCCTGGGACCGGGGCTCAGCCGCCACACCCGTGTCTCTGAGACCCCAGGGTCTGTTCCCTCTAGTACACTATTCACTGCATTTGAATGTGGAGGGTGGAGGACTTGCCTGTGATTCTTCACTTGAGGCACAGAATTTCAGTTTTCTAATGAATCCATTTACAGAAGTCCCAACTCAGCCCTACAGGGAGGTGCGAATGGGGTCAGGCTTTGTTCTGGAGAAGAGATGGGCTGTGGGTGGGCTTCATTTTCATAGAGATGGAGAGAAAAGCTTCCAGACACAAAGGGTTAGAACACAAAACAAGACCCTACGTGAGCAGTTTGTGTTTTTTTCTTCTTCCTAAACAGTAAGAATTTGGAAAGGACATTTTGATCTAATGCCTTTTCCCTGAATGCCTCTTGCAGACCCTGGGTTCTGGAGGGCGAGACCCAGGTGGACTGGCTGGGTCTGGGCCCTCTTCTCGACCCTGTGCGCTGGCACGTAGATGCCCCGCCCCTGTCTCCTCTGGGCCCCGCCCACCCCTCGCCCCGCCTCCTGGGGCGTGGCCTCGCTTCCCAGTAGGCTCTTAAGCAGTGAGTTAGAGGCCGGCTGGTTGTCCTTCAGGCCGTGTGACACAAGGCTCCGTCTCCTCCTCTGCTCCAG
Seq C2 exon
GTTTGCCGGAAATATGGAGAGGCAGCAGACCGACAACCTGCTCAAACCCCACGCCAGCGGGACCTACCTAATCAGGGAGCGGCCGGCGGAGGCCGAGCGCTTTGCCATAAGTATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511:ENSBTAT00000005932:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development