HsaINT0179943 @ hg38
Intron Retention
Gene
ENSG00000160293 | VAV2
Description
vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr9:133774935-133776080:-
Coord C1 exon
chr9:133776028-133776080
Coord A exon
chr9:133775052-133776027
Coord C2 exon
chr9:133774935-133775051
Length
976 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCCCGGCCCCCTCCTGTAGGTT
3' ss Score
10.85
Exon sequences
Seq C1 exon
CCGCCCATCAGCCGGCCGCCATCCCGGGAGATCGACTACACTGCATACCCCTG
Seq A exon
GTGAGTGGATCGTGGGCTGCAGACATGGGCATCTGGTGGCCTCTTTGTTATGGGGGCATGCCCGCCGGGTCTGGGTGGTGCCTGTGAGCGGCCCAGCAGGGTGGAGGCCCCAGGCTGCCTGTTGCCATCTCCAGGGCACTGAGCCCAGTGGCTCCCAAATGCCTTCTCCCTCCTGGCCTATAACTCTCCAGGAGCCTGGGGGAGTCCTTCTCCTGTAGGCAGCTGTTAACCCTCTCTAAAACAGCTCAACTGGCTCAGATATTTCAGGGAATTAAACCCTTTTTGAATTTTATCTGCACTATATAAAAGTGGTATATTTGAGGTCACAGGTGTAATCCACTTACTGACAATACAGTTGCTTGGTGGGAACAGTGAGGCTGTTTGAAATCACAGAAGTCCCAACTGTCCTGACAGTGTGGCAGCAGATTTTGGGAGAGAGCTTGCCTTGCCCTCTCAGGGTGGGCTTCATTGCAGTACAGGTGGCAGGAAGAGCTTCGTTTCAAAATCTGTTCAAAATTCAACTGACATGGATGTTGGCAATCTCCAATGTGTTACCAAAAAAATCCACATAAGCAGTTATGCCTTTACTGCTTTTGAAATAGTGAAAATATATTTTAGGAAAGAAATTGGATCTACTGAATACGCTGAACTCCTCTGGCAGGCCCTTGGGGTCTGTAGAGCAGAAGACAGCATGTGGGACTGGCTGGTGGCCACAGTCACCCCTCTATTTAACCCCTCTCAAGATCTGTCCTGAGCCTCACTGTATCCCACTGTAGGAAGGGTCAGATGCCAGACCCCATCCACAGTGGTGCCCCGCTCATAGGGACCCAGCCTGTTCTCTTGGGTTCATTAGGAGATGAGCTCTCAGATGAGGACTGCAGAGTACTTCATGTGGCCTGCCACGCACGGAGGGCTGGGCACCCCTCAGACACTGTCCTCACTGCGGCTCTCGTTTCCTCCCGGCCCCCTCCTGTAG
Seq C2 exon
GTTTGCAGGTAACATGGAGAGGCAGCAGACGGACAACCTGCTCAAGTCCCACGCCAGCGGGACCTACCTGATCAGGGAGCGGCCTGCCGAGGCTGAGCGCTTTGCAATAAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293:ENST00000371850:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains