MmuINT0172703 @ mm9
Intron Retention
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27127295-27129260:-
Coord C1 exon
chr2:27129208-27129260
Coord A exon
chr2:27127412-27129207
Coord C2 exon
chr2:27127295-27127411
Length
1796 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTCTGGTTTTCTGACCCCAGGTT
3' ss Score
7.96
Exon sequences
Seq C1 exon
CCGCCTACTGGCCGCCCACCATCCCGGGAGATCGATTACACTGCCTACCCGTG
Seq A exon
GTAAGTGGATTGTGGGCTGCAGTATTGGGCATTCGGTGGCCCCTATGTCATAGGGTATGGCCCTCTAAGCCTATGAGTGGGCCTGGGACGGGGCGGAATTGAGCCCCACCTAGGCTATTTCTCTGTCTCTAAAACAGATCAGCAGGCTCTAATATGTGTGGTAATGAGCCCTTTTCTATGCAGACTTCATTGAGCTTCATGGAAGCTGTAGAATGTGATGTGTTTAGGGTCTGGGTTATAGTCATGCCTTTGGTGAGAAGAGGCAGTGTGTTACATGGAAAGATGAAGGTGGTGTTTTGGGTATAGTCACAGATCATGAGTCTGTCCCACATGGGCCCAGTGCCTACAAAAACTTGTCCTCAAAGCCACTTAGCCCCACATGGGCAGCATACATACCTCTAAACCAGGTGGGCTCATTTCCCAGTTCAGGCCAGTATCCCCAGCCTCACAAGTGGCGTTTGCAGGTTCCCAAGTCCTTGCCCCGTCCTAGTACCTCAGTGTCTGTCCCTTGCATCTCTCTAGGCTTTACTGGGCCTGCTGCATACATGCCTATCCTGACTGTCTCTGACCTGCAGGTAGTGCATGGTTGCTGACAGAAATTAAGTGGTTCTCACTTGATGGAGTGTTTGTTTCTTGTCATTTCTCTGTGGCAAACACCTGACCAAGCAGTGTAAAGACGGAAGGATTTCTCCTGGTTCACAGTTCTGGGTACAGTGCATCTCGGGTTGTATGAGGTAGCTCTTTACAGTGCACACCAGTCAGGAAGCAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACACAGAGACAGAGACAGAGACAGAGATTGATTATTATTTTTTCCTTTGGTAACTCCAGACCTGTATATAGTGAATTTTAGTCACTGTACCCCTGTGACTGTCCATGTGACTCCATCTCCCCAACTTCTCGCCAGCTGGTTTCCTTCTTAGTTTTATATCTTTTTTGTGTGTGACCACTGAGTTTAGTTGGGTTTGCCTGTAGATCATTGGAGGTGGGGGGCTGGGGGGCAGTTGTGTTTGTTTGTTTGTTTGTTTAACTAGAGTATGGGCAACTTACCAGTGGCTACCACTAAAGTGACCACCCCCACCCCAGCCAGCAGGAGATTTAATATATTAGCCCTAGATCTACCCTAACTGTGCGCACTGAAGACTAAGCTCATGGTGTCATGCCAGGAATGTGGGGGTTGCTTTGCTGAGGGGACCAGCCCCCACCTCATTGCCCATTTATTTACTTATTTGCTTATGTACGTACATATGTGTGTATGTGGTGGGAAAGGCCCTTTTTGCTCAGTTCTCATTCAACACAGGTGCTGGCCTCCTCCAGAGTGTCTCTCCCAAAATGCCCCCTTGTTACGTCTTCTCGAGTAGTGCAGAGAATCTAGAAGATGGGGTCTGGTAGAAGTTTGTGATTTGTGATCTGAATAGTCTCTCCACCTGGCTATGGCGCGCTCTTATCTCTCCCCTGTGACGTCTTTACCAGATACCTTTGTATGCTTGACTTGAGGTTCTGGTCCCCACATTGTGCCCTGTGTATCAGGACATGGCCACATACCCCCCACCCCCCACCATCAGTCATGTGTCTGCTCACCTCAGAGGGTCAGACAAGGAGCAGAGCCCGAGGCAGGTGTCTCACACACACACACACACACACACACACCCCAGGACCACTCCACCTGCACACACACACACCCCAGGCACTGCTCCGGCAGCATCACGTCTCAGCTCTGGTTTTCTGACCCCAG
Seq C2 exon
GTTTGCTGGCAACATGGAACGGCAGCAGACGGACAATCTGCTCAAGTCTCATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-Vav2:NM_009500:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: