GgaINT0124885 @ galGal4
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7054222-7055136:-
Coord C1 exon
chr17:7055084-7055136
Coord A exon
chr17:7054339-7055083
Coord C2 exon
chr17:7054222-7054338
Length
745 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GCTCAGCCCCTCTGGCTCAGGTT
3' ss Score
3.77
Exon sequences
Seq C1 exon
CCTCCCAACAGTCGTCCGCCGTCGCGGGAGATCGACTATACGGTGTACCCATG
Seq A exon
GTGAGTTGCACTGGGATGTGTCAGCTTTGGTTTTAATTCCTGCTTTGTCATCAACCTGTGCCAACACAGAGCTGTGAGCGCACCTCGGTGTCCAGGCATTGTAACCCATGGTGCCCATGGGGATTTCATCGTTGAGAAAGTGACTTGGGAAGGGAAGATGCAAGTTCTGCCTTGGCAGGAGAGGTTTTGCTTCCCTTTTCCCCGTGCCTCTTCCCACTGGCACCATCTAGGATTTCAAGTTCATGAGTCTAAATTACCATGAGTCCTAGTTATTCCAGCTCCCATTGAAGCCTCCTTCCTCTGGGGACCAATTCCCAGCCAGTGGGGTTTTCTAGGCCCCCTGGAAACATAGGGGACTTAGAATCAGAGAACCATTTGAGTCAGAAGGATCCTTTAAAGGTCATCTGGTGCTACTCCCTGCACTGAACAGGGACACCTACAGCTCCTCCATGGTGCTCAAGGTCCACCCTGGCCTCAGCCTGTCCTCGTAGGGGATGTTCCATCGCTTGGAATGCCCTTCAAACTGCACAGCCCATTGCTCTTTATTCAGTGGCAGTGGCTGATTCTGCCTCTGAAAGATTGGATCCGTTTCTCTACTCTCCCAACCTTCACACCTTTCATAAGAGATGCACCTTTTTGCCTAAAATACACCAGAGCTTGAAGGAAGCCGAATCCTAGCTCAGGAAACAGCCTGGAGAGGCAGCTGTCCCCAAGGAGGGCGGGATGCTCAGCCCCTCTGGCTCAG
Seq C2 exon
GTTTGCAGGGAACATGGAGCGGCAGCAGACGGACAACCTGCTGAAGGCCCACGTCAGCGGCACCTACCTGATCCGCGAGCGGCCGGCCGAGGCTGAGCGCTTTGCCATCAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]