RnoINT0162652 @ rn6
Intron Retention
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5820471-5822915:-
Coord C1 exon
chr3:5822863-5822915
Coord A exon
chr3:5820588-5822862
Coord C2 exon
chr3:5820471-5820587
Length
2275 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CTCTGACCCCCTGACCCCAGGTT
3' ss Score
6.81
Exon sequences
Seq C1 exon
CCGCCTGTTGGCCGCCCGCCATCCCGGGAGATCGATTACACTGCATACCCGTG
Seq A exon
GTAAGTGGATTGTGGACTGCAGTATGGGGACTTCGGTGAGCCCTGTGTCACAGGGTATGGCTCTAGAAGCCCAAGCCCATGAGTTGGCTTGGGCCGGGGTGGAATTGAGCCTCATCTTGGCCGTTTTCCTGTCTCTAAAACATCAGCAGGCTCCAGTGTGTGGTAATGAGCTCTTTTCTACGCAGGACTCACTACGTACGCTTCATCATGGAAGCTAGAAAGTGCTGTATTTAGGGCCTAGTTTGTAGTCATGCCTTTGGTAAGAAGAGGCACTGGGTTACACAGAGGATGACGGTGGGTGTCTTAGGGTCCTATGTGAACAAACGCCATGACCAATGCAAGTTTTATGAGGAACAACATTTAACTGGGACTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATCGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGTTCTACATCTCCACCTGATGGAAGCCAGGAACAGACTGAGCATCCTCAGGCAGCTAGGAGGGGAGGGTCTCCAAGCCCACCCCCACAGTGACACAGTTCCTCCAACAAGGCCACACCTTCTAATAGTGCCACTCCCTGGGCCAAGCATATGCAAACCATCACAGTGGGTGTTTGGGGTACGGTCACAGATCAGGAGTCTTGGGCTGATTCTGTTGTCCCTGATGGGGCCAGTGCCCAGAAGAACTTGTCCTCAAAGCCGCCTAGCCCCACATGGGCAGTGTACATACCTCTAAACCAGATAGACTGATTCTCCAGTTCAGGCCAGTATCCCCAACCTCACATGTGGCATTTGCAGAGTCCCAAGTCCTTGCCTCCTCTTAGCACCTCAGTGTCTGTCCCCTGCACATCTCTAGGTCCCATGGGGCCTGCTGCGTGTATACCCTGCCTGCTCTAACCTGCAGGTGGCACATGGTTGCTGACACAGAGATTGCATGGTTCTCACTTGATGGAGTGTTGGCTTCTTGTCGTTTCACTGGGCAAACACCTGACCAGGCAGTGTGAGGGAGGAAAGGTTTATTCTGGTTCACAGCTCTTGGTGCAGCATATCACAGGGCATAGGAGGCAGCTCCTCCCCTGTCAGGGAGCAGAGAGGTGACCTAATGCTGCCTCAGCTTGCCTTTTCTCTTTGTTCAATCTGAGGGCCCAGCTCAAGGGTGTGGGCTGGGCCTTCCGCCTCCATTAGCTGAATCCAGGCAATCCCTCAAACATCCAGAGATCTGTTCCCGTGGTGATTCAGGTCGACAGTGAAAGTTAACCACCGCACAGTTGTTTTTGCTTTAATTTTTTTTTTCTCCTTTGCCAACTCCAGGCATGTAAGAGTGAATTTTAGCCACTGTACCCCCGTGACTCTCCGTCTCCCGACTTCTCCCCAGACAGTTTCCCTCTTAGTTGTGTATCTTTTGTGTGTGTGACCATTGAATTTAGTTAGCTTTGCTTGTAGACCATTGGGGGGGGGGTGTTTTGGTTTTTTTAACTAGAGTGTGGGCAACCTACCGGTGGCTACCACTAAGGAAAGTAATCCCCCCAATCCCCAGCCTCCAAGAAATTTAATATATTAGCTCCAGATCTACCCTAATTGTGCAGACTGAAGACTAAGCTCATGGTGTCATGCTAGGAATGTGGGGGGGTTGCTTTGCTGAGGGGACCAGCCTTCCCCCACCCCAATCCACAACTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATATCTATCTATCTATGTATCTATCTATCATCTATCATCTATCTATCTATCTATGTATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTGTGGTAGGAAAGGTCTATTTTTGCTCAGTTCTCTTTCAGCACAGATGCTGGCCTCCTCCAGAGTGTCTCTCCCAAAAATGCCCCCGTTACTTCTTCTCAAGCAGTGCAAAGAATTTAGGAAATGGGGGCCAGGTGGAAGTTTGTGGTCCGAACAACGCCCCCACCTGGCTGTGACACTCCTATCTCTCCCCTGTGACGTCTTTACCAGATACCCTTGTATGCTTGATGTGAGGTGCTGGCCCCCACATCGTGCCCTGCCTGTCAGGACATGGCCACATACCTGCCTCCCATCAGTTACCTGTCTACTTACCTCAGAGGTCCAGACAAGAAGCAGAGCCTGAGGCAGGTGGCACACACACACCGGGGGCAGCACTCTGTCAGCATCGAGTCTCAGCTCTGACCCCCTGACCCCAG
Seq C2 exon
GTTCGCTGGCAACATGGAACGGCAGCAGACGGACAATCTACTCAAGTCTCATGCCAGCGGGACCTACCTCATCAGAGAGCGCCCAGCAGAGGCAGAGCGTTTCGCCATCAGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422:ENSRNOT00000009893:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(0.1=0.0)
A:
NA
C2:
PF0001719=SH2=PU(52.0=97.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]