BtaINT0159761 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11489255-11490118:+
Coord C1 exon
chr22:11489255-11489434
Coord A exon
chr22:11489435-11489972
Coord C2 exon
chr22:11489973-11490118
Length
538 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CCCAGCTTCCTGCCTTGCAGGGC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGGCACCCCAGGCACAGCAGGAAGGGGCAGCCAGCACCCGCCGTGAGCCTCTTCCACATCCAAGGCACCGACAGCTACAACACCCGGACCATGGAGGTGCCAGCCCGCGCCTCAGCCCTCAACTCCAGCGACGTCTTCCTGCTGGTGACAGCCAACCTCTGCTACCTCTGGTTTGGAAAG
Seq A exon
GTAGCCCACGCCCGGGGCAGGGGCACCAGGCCAGGGAAGTCCACTCCTCAGCAGAGGCTGATTGCAAGCCCAGCCTCAGACAGGCCAGGAGGGAGGCGGCGGAGAGCCACCTGTGCTTTCTGGAACCTGGGGGAAGTTATAACGTGACAGGTGGACAGGGGCGTCCACAGGTCAGAGCCACGCCAGGCCGGGGCCACCTCCTCTCCTTCCGGCCTCGTTCAGGGACCAGGTCCCTCCCCAAGTGTCTTGGGGATCTTCAGCTGATCTTCAGCGTAAAACCTGAATGATCTGCAAGTCTAGAGGTCTCCATCCTGTGCTCCGACCTGGAGAGGGTCCCTGTGACCTTGATCGCCTGAGGAGACAGAAGCCGGGGGCGGGCGGGGGCGGGGCAGGGAGGAAGGGAGACGCTTGTTCACGCTGGGCCGCGAGCCCAGGCCCCACGTGACTCCTGCTCCCAGGCCCCCATTAGCGGGGGCTGAGGGGCTAGAGGTGAGGCCCTCTCCCGCTGCAGGGCCTGACCCAGCTTCCTGCCTTGCAG
Seq C2 exon
GGCTGCAGCGGTGACCAGCGTGAGATGGCGCGGACGGTGGTCACCATCATCTGCAGGGAGGATATGGAGATAGTGCTGGAGGGTCAGGAGCCTCCCAACTTCTGGGAGGCTCTGGGGGGCCGGGCGCCCTACCGCAGCAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACAGCAGGAAGGG
R:
CTCTTGTTGCTGCGGTAGGG
Band lengths:
318-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]