RnoINT0162876 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127748491-127749343:+
Coord C1 exon
chr8:127748491-127748670
Coord A exon
chr8:127748671-127749197
Coord C2 exon
chr8:127749198-127749343
Length
527 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ACCTAGGTTCTGCTTGCCAGGGT
3' ss Score
4.66
Exon sequences
Seq C1 exon
GGGAATGCAGGCAACAAAGGGGGGAGGCTGCCAATATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGGACTATGGAGGTGCCAGCCCGAGCCTCCTCCCTCACTTCCAGCGACGTCTTCTTTCTGATCACAAGTCACGTCTGTTACCTCTGGTTCGGGAAG
Seq A exon
GTACCAGTGACTTACCCCTGGGATGGTGGTGCTAGGCCAGAGCTGGGTCCCCTCCACACACGGCTGCAGACTTAGTCCACAGAGAGGGTCCAGTGGAGATGATGCTGGGGGTGGTGTGAAGTGGCCCAGGATAGAGCTGGGGGAAGTTACACAGTCTCAAATGGCCTGGGGTTCCTCAGGGTGGAATGTGCCTGGCTCTGGCTGCCTCCCTTCCTGCTTGGGGACTTTTCCCAAGCCTGTCTGGGACAGGGAGAGGCCTAGTCTAGTTTGCTTGATTTTCTTTGTTGAGGTCATTGTTGGTTTGTTTTCTTATCTTAAGCATAAACCACAAATGGCCCCCAAGCCTAGATGTCTCTTATCTATGCTCTGAACCCAGACGAGGTCATGGGGTTACTGTTGGGGACTAGAAGGGAGATACAGTGCCCAGAGCTGCCTCCCTCTGCTCAGGTCCAGCTCCTCAGAGGACCCAGTGCTTAGAACATGGGAGGTAAATGTCTACAGAGCTTGACCTAGGTTCTGCTTGCCAG
Seq C2 exon
GGTTGTCATGGGGACCAACGTGAGATGGCGCGGACAGTGGTAACTGTCTTTCCAGGGAATAATAAGGAAACAGTGCTGGAGGGTCAGGAGCCTCTCCACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGCAGGCAACAAAGGG
R:
CTCTTGTTACTGGGATAGGGGG
Band lengths:
326-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]