DreINT0022375 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20281895-20284268:-
Coord C1 exon
chr24:20284089-20284268
Coord A exon
chr24:20282041-20284088
Coord C2 exon
chr24:20281895-20282040
Length
2048 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
TGTGTGTTTGTGTGTCACAGGGC
3' ss Score
10.24
Exon sequences
Seq C1 exon
GGTGGCACAGGCCGGTCGGGTGTTGTGAACCCTGATCCTGCTGCCAGACTCTTCCAGGTCAGAGGAACACATGAGCTGAACACAAAGGCCACAGAGGTTCCCGCCCGAGCCTCTTCTCTCAACACCAATGACGTCTTTCTGCTCAAAACATATCAGACTGTTTTCCTGTGGTACGGCAAG
Seq A exon
GCAAGTCTGAAACTGCACTATACACTATTAATATAAAATCAAATCAATCTATAACAACTAGTTTTAAATAAATGAATGAATAGATAAGTACTAATAATAATAAAGTGTGTAAACTTAAAACAAGAAAAGTATAGCATTTATATGGTTAAAAAAATTTATTAAAAATTAATAATCACAATTAATACATAATTATGGTTATTTAAAGGGCCATGAAACCCCCTCGTTTCAGCTGGGTGTTTTCACACCTCTACTTTGGAAAAAGTCAGAAAAGTGGGCGTGTCCAGCTCTGTTTAGGGGGGAGTGTCGGAGGAACTAAAGTGGGATGGTGTGGGAGTGTCTATTTGGGCACGCGCAAGTTTCAGAGTCAAAATACAAACACACACACAGGAGAAAGTGATGGTGTTTAACCTGCATGGACATCTGTAGTCGAATTATTTGCCAAATTATTAAATGGTGGACTTTAACTGCAGTTTTGCTCTTTCATTCAGCGAATTCATTCATTTCCCTCGCGACAAACGAGATATTTGATTCGAGGAACTGCTCTAAGCATGTTATTTTCATGCAATGTTTAATACCGCACGGCGAGTTAGAGAAAAAAACCCTCCGCATTTCCCGGAAACTTAGATGCACACAGCAGGTAGTGTCAGAAAGCCGAGTGTGAGCACTGGTCGCTCACTTACCAAATCTGTAGAGACAGGACAATCACCAGCAACTAGAGCCGCGTCTTTATTAAGAGGAGACTAAAGCGAATCCGGATCTCAGCGTTTGCAGATGAGAACAACTCTCAGGTAAACAATAATCCTCCTTAGACACGTAAGTTATTGTTGTCGAGCGTCGCGTACACTGTTAATCCACACGTGACTCCAGCTGCGCTCTCACAGAGAGAAAATGAAAACAAAACTTAACGGCAGCAGACTATAAAAGCAACACTTCACGCTTGTTTTGCCAACACAACGTGGCGTCTCTGTCGTCTAAACACTGTGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCTTTAATCATCCATTAATGCATCACACTGTAACACGTAATAAGACACACTCTGGCACAGACGTCCAGTCTGCACGCTGGAATACACGCTATTATGTCATGGCCGTGACGCAGCTTCAAACATTTGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAAACAACCAATTTACACTTTTTAGTGAAATATAGGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACGACTGTCAACAGCTCAAAAAATGTGTTTTGGTGTTTCGTGACCCTTTAATACAATAATTCATTCATTTTGCTTTGAATTAGTCTCTTATTTATCAGGGGTCACCACAGCGGAATTAACCGCCAACTATTCCAGCATACTGTATGTTTTACACAGTAGATGCCCTTCCAGCCACAACCCAATACTGGGAAACACTCATACACAATGGACAATTTAGTTCATTCAATTCACCTACAGCTCACATCTTTGGACTGTGGGGGAAACCGGAGCACCCGAAGGAAACCCACACCAACATGGGGAGAACATGTAAACTCCACACAGAAATGCCAACTGGCCCAATCGGGACTCAAACCAGTGACCTTCTTGCTGTGAGGCGATAGTGCTAACCACTGAGCTAATGTGCCACCTTATTTAATACATTTTATACAATATAAATAATGCTTTTAATGTTTATATATAACTAATGTTCTATATTTGTTTAAATACCTACAGTATATAAAACATTATGAATGAAATCTGTAACTGTTGCTGCTGTCTTTCCCCCTATGGATTTCCCCATGATGAAAAGCAGCTTTTAAAATCCAACTAAAATGTAATCTAATTTCAATTTTAATCTGATCTCTCTTTTAATTAAACTAATGTTTTATTTGTTGCTGCTGTTGTTGTTTTATGGATGCAAAATATCTTTGTACATGTATTGGTTAGATTTGGATTAATATGTGAACTGTGTATAGTATACACATAATAGACCTGTGTGTTTGTGTGTCACAG
Seq C2 exon
GGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(47.8=55.0)
A:
NA
C2:
PF0062617=Gelsolin=PD(49.3=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]