GgaINT0102137 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4586557-4587099:+
Coord C1 exon
chr2:4586557-4586736
Coord A exon
chr2:4586737-4586953
Coord C2 exon
chr2:4586954-4587099
Length
217 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTTGTGTCCTGAACTCCAGGGC
3' ss Score
8.08
Exon sequences
Seq C1 exon
GGTGGCACAAGCCGGGCCCAGAAAAGCACCCCCGAGCCAGCAATACGCCTCTTCCAGGTGAGAGGCACAAATGAGATGAACACCAAGGCCACGGAGGTGCCAGCCCGGGCCTCCTCTCTCAACTCCAATGATGTATTCCTGCTAGCAACCAACCAAGTCTGCTACCTGTGGTGTGGGAAG
Seq A exon
GTGAGACTGCTGTGGGCAAATAGCTGGTGTGGGTCTTGAGCCCCCTACCTGCAGGGCCATGGAGCTGGTCACAGATTCCAAGTGACCAGCTGAGGTGAAACCCTCAATAACAGGTCTGAAACTCTATGAAGCAGTGGTGTAGGGCCAACTGTGTGTGGCCCCGCAGTTTTTCTAGTCTGTTACTGACTCAGCCTCAATTTTGTGTCCTGAACTCCAG
Seq C2 exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGCAATACGCCTCTTC
R:
TCTTTTCACTGGCATAAGGGGC
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]