MmuINT0172943 @ mm10
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119066701-119067556:+
Coord C1 exon
chr9:119066701-119066880
Coord A exon
chr9:119066881-119067410
Coord C2 exon
chr9:119067411-119067556
Length
530 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
ACCCAGCTTCTGCTTGCCAGGGC
3' ss Score
5.1
Exon sequences
Seq C1 exon
GGGAATGCAGGCAACAAAGGGGAAAGACCACCAGTATCCGACACCAGGCTTTTCCACGTGCAAGGGACCGAGAGCCACAACACCAGAACTATGGAGGTGCCGGCCCGTGCCTCCTCCCTCACTTCTGGTGACGTCTTCTTTCTGATCACAAGTCATGTTTGCTATCTCTGGTTTGGGAAG
Seq A exon
GTACCAGTGACTTCCCCCTGGGAAGGTGGTGCTAGGCCAGAGATGGGTTCCCCTCCGCACAGTTGCAGACTTAGTCCACAGAGATGGTCCAGTGGAGACGATGCTGTGGGTGGTGTGGAGTGGCCCAAGACCCTGATAGATCTGGGGAAGTTACATAGTCACAAGGGGACTGGGGTTCCTCAGGGTAGGATAGCCTGGCTCTGGCTGCCTCCCTTCCTGCTTGGGGACTTACCCAAGCATCTCTGGGAAAAGGAGACCTCGTCTAGTTTGCTTGATTGTTTTGTTGTTGTTGTTGTTGTTGTTGATGTTGGTTTGTTTTCTTATGTTTAGCATAAACCACAGATGACTCCAAGCCTAGATTCTCTCAACCATGTTCTGAACCCAGATAGGGCTATAGGGTTACAGTTGGGGGACTGAAAGGGAGGTCCCCAGAGGTGCCTCCCTCTGCTCAGGTGCAGCTCCCCAGAGGACCCAGTGGATAGGACTGGAGGTGAAGGTCTGTAGAGCTTGACCCAGCTTCTGCTTGCCAG
Seq C2 exon
GGCTGTCATGGGGACCAACGTGAGATGGCGCGGACGGTGGTCAGTGTCTTCCCAGGGAATAACAAGGAGACAGTGCTGGAGGGTCAGGAGCCTCTCTACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775:ENSMUST00000051386:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.329 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGCAGGCAACAAAGGG
R:
CTCTTGTTACTGGGATAGGGGG
Band lengths:
326-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types