HsaINT0180202 @ hg19
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38043887-38044804:+
Coord C1 exon
chr3:38043887-38044066
Coord A exon
chr3:38044067-38044658
Coord C2 exon
chr3:38044659-38044804
Length
592 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GCCATCTCTTTGCCTGCTAGGGC
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAGAGAGCTGGGCACCATGGAAAGGGGCAGTCAGCATCCACCACAAGGCTTTTCCAAGTGCAAGGCACTGACAGCCACAACACCAGGACCATGGAGGTGCCAGCCCGTGCCTCATCCCTCAACTCCAGTGACATCTTCTTGCTGGTCACAGCCAGCGTCTGCTACCTCTGGTTTGGGAAG
Seq A exon
GTACCCACAGCACTGACCACTTGATTCATGCCCAGATGTAGTGGTGCCAGGCTGGGGGTGGGTCCTCTCCACAGGGCATGCAGACTTTGAGTCCAGCCTCAGATAGGCCGATGGGGGGAATGGGGAGGGGAAGAAGCCACAGGGTCCCCTCTAGAACTTGGGGAAAGTTACAAAGTGACAGGTGGACCTGAGAGTCCGCAGGTCAGAGCCAGGCCCAGGCCGCCTCCCCTCCTTACTGCCTGGAGCACAGGGCATGTCCCTTCCCAGGTCTCTTGGGAAAAGGGGAGGCCTATGCCAGTTTGCTGGAGTTTTCTCTAATATTCAGCATAAACTATGACTGACCCTCTAAGCCTGGGGGCCTCCTATCCCATGCTCTGGACCCTGCGAGGGTCCCAGACCCTGCGATCCAGATCAACTGGGGACACAGGCCTGTAGGGTGAGGAAGATGCCTTGTTCACTGGTGTCCTGCTGTCAGCTTAGGCCTCCTGTGACTTGGGCCCAGCCCCACCCCATACACCCTGTGAACGGGACGTGGGGCCGGAGGTGAAGGCCCCTCCTCATGCAGGGCCTGAGCCATCTCTTTGCCTGCTAG
Seq C2 exon
GGCTGTAATGGTGATCAGCGTGAGATGGCACGGGTGGTGGTCACTGTCATTTCCAGGAAGAATGAGGAAACGGTGCTGGAGGGTCAGGAGCCTCCCCACTTCTGGGAGGCCCTGGGAGGCCGGGCCCCCTACCCCAGCAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-VILL:NM_015873:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGGAAAGGGGCAGTC
R:
CTCTTGTTGCTGGGGTAGGGG
Band lengths:
314-906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)