BtaINT0159762 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11489973-11491201:+
Coord C1 exon
chr22:11489973-11490118
Coord A exon
chr22:11490119-11491056
Coord C2 exon
chr22:11491057-11491201
Length
938 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
CCTTGTGCCATGCTGGCCAGGCC
3' ss Score
4.56
Exon sequences
Seq C1 exon
GGCTGCAGCGGTGACCAGCGTGAGATGGCGCGGACGGTGGTCACCATCATCTGCAGGGAGGATATGGAGATAGTGCTGGAGGGTCAGGAGCCTCCCAACTTCTGGGAGGCTCTGGGGGGCCGGGCGCCCTACCGCAGCAACAAGAG
Seq A exon
GTGACAAGGCTGGGAAGAGGGGAGGAAACTGAGGCCCAAGAGGGTGGGTGATTAGTTACGAATCACACAGGGAACTAGACAGAGCCCAGGAGCCCACCCCTCTCTTCTCCCCATCACTGACTTGTAGCGGGAAGATGCTGGGGAGAGCGATGCAGTGGCGCCCTCTGCTGGAGAAATGTACTCCCTGCACGGTCCCGTCCTGGACCATCCAGGACGCAGAGGGCCCGAGGGCAAAAGCGCCGTCCCCCAACCCCGCACTTCCCAGAGGTGGTGTCCCCAGGGTAATGGGACATGTGGGGAAACAGCGTGTGTGCAGTGTGCCAGAATAGTGTGCGTGTCGTGTGTAAATGGATAAGGAAAGGCAGAGGTCTCTCGGGGCTCTGGAAGCAGAGTGCTGGTCTCTCTGTGTGTGCGGGACCTGGCTATTCCCCCCACTGTCTCCTGAGCGCCTACATTCTGCGGTCCCTTCTCTCAGTCTGGCTTCTCTCCTCCTACTCCTCCCACCTTCGGCCTGAGGCGCAGCTCCTGAGCTCCCAGCCCGGGGTGGGGCCAGCGGCTTCTCCCTCCGGGGGGAGCAGGACTTCCCCTGGGCCCTCCCTGCCCTCCCTACCTCCATACTCAGCCGGCTCCCCCCTCCTTCCCGGTGCTCCTTCCCCGGGAAGTTCACGGGGCAGCTTGTGCTTCGGCTGCCTGTGGGTAGACAGATCACCTAGCTTTCTCCACTGACACATGGAGGCCTGGAGGAGGGCAGGCGTTTTGGGAGTAGACCCTGGGATCGGGGAGCTCAGAGGAGGGCCAGCGCGTCCTGCCCTAGGAGGCGTTGTGTTCCAGCCCCGGAGGGGTGGTGGAGGGGTGCTGTGCGGAGGGCTGGCTTGGCCCAGGCTGCCAGAGGCCCAGGGCTCTCTGCGCCCCTCACAGCCTTGTGCCATGCTGGCCAG
Seq C2 exon
GCCCCCCGAGGATGTGTGCGACTTTCAGCCACGACTGTTTGAGTGCTCCTGCCAGGCGGGCCCCCTGGTCCTCACAGAAGTAGTGTTCTTCAGCCAAGAGGACCTGGACAAGTATGACGTCATGCTGCTGGACGCCTGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.3=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(33.8=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGACCAGCGTGAGAT
R:
CTCCTGCCAGGCGTCCAG
Band lengths:
283-1221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]