MmuINT0172944 @ mm9
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118976529-118977574:+
Coord C1 exon
chr9:118976529-118976674
Coord A exon
chr9:118976675-118977429
Coord C2 exon
chr9:118977430-118977574
Length
755 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
ACAGCCCCTCCTCCGGACAGGCT
3' ss Score
7.04
Exon sequences
Seq C1 exon
GGCTGTCATGGGGACCAACGTGAGATGGCGCGGACGGTGGTCAGTGTCTTCCCAGGGAATAACAAGGAGACAGTGCTGGAGGGTCAGGAGCCTCTCTACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
Seq A exon
GTAACAGAATCAGGGGAGAATATGTTTATTCTGAGGAAGAATTGAGGCTGGAAGGTGAGCCCTCCTCTGGCCAGGTTTCCTAAGGACGTTCCCAGTGGAAGGTCACACAGAGATCTGGACTAAATCTGCGGGACTCTTAGTCCTCCTCCTGCAGGGGCCATTCGAGTCAAGCCTACCTTGCTGTTTCCAGCCCTGGGGTAACGTTAAGGGGGGCAGTGTCAGGGCTAACAGGGAGAAATGGTGCCCTCTGCTGGCAGAATCCACTCCCTGCATTGCCACTAAAGGTGATCCCTAACCAGTCAAGGCATGCATAGGAGGTAAGAACAGAGTAAAAATTCAAGGAAGGAAGGAGCCCTGGGCCCTGCCGCCCACCCAAGTCTCATTAGCTCCCAGCCTCGGTCCCCTCCTTCCACCCTGGACCTGAGGCCACTTCCTGACTTAACTAAGTTTAGGGGACTCCCATTCTAGGGAAGGCAGGGCCTCCGTTCAATGATCCACACTAGGCCAGGAGTCCCCTTCCCCAGTGCCAACCCTGATGACTTCATTCAGCAGCTGACAGGTTTTCGGTCACCATTGAAGGAAAGGGACCCTGCCCTGGAGCAGGTACTCCTAAAGGAAGTTGAGGTAGGTGGAGGGCAGAGGAAGGCCCAGGGCTCCTGTCCCAAAGAGCTGCTTTCCCTGAGGTAGGGAGAGCACCCATGCCAAGGGCCAGTGTGGTCCAGACTGTGCCCCCTCACAGCCCCTCCTCCGGACAG
Seq C2 exon
GCTTCCCGAGGAGGTGTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTGTTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-Vill:NM_011700:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(32.9=51.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTGAGATGGCGCGG
R:
CTCCTGACAGGTGTCTAGTAACA
Band lengths:
276-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: