RnoINT0162877 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127749198-127750176:+
Coord C1 exon
chr8:127749198-127749343
Coord A exon
chr8:127749344-127750031
Coord C2 exon
chr8:127750032-127750176
Length
688 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
ACAGCCCCTCTTCCGGCCAGGCT
3' ss Score
5.05
Exon sequences
Seq C1 exon
GGTTGTCATGGGGACCAACGTGAGATGGCGCGGACAGTGGTAACTGTCTTTCCAGGGAATAATAAGGAAACAGTGCTGGAGGGTCAGGAGCCTCTCCACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAG
Seq A exon
GTAACAGGATGAGGGGAGAATATATTTATCCTGAGGAGAAACTGAGGCTCCAAGGTGAGCCCTCCTCTGGCCAGGCTTCCTAAGGAGGTCTCCCGTGAAAGGTCACACAGAAATCTGAAAAGACTCTCAGTCCTCCTTCTGCAGGGGCCATGGGAGTCAAGCCCATCTTGCAGTTTCCAGCCCTTGGGAAACTTAAGGGGACAGTGCCAGGGCGAACAGGGTGGAATGGTGCCCTCTGCTGGCAGAATCCACTCCCTGCACTGCCATGCCTGGTGATCCCTAAACCACAGGATAATTGGCAAGGCATGCACAGGAGATAAGAACAGAGTAATAACTCAAGGGAGGAGGGAGCTGCATCCCTGGGCCGTGCCATCCACCCAAGTCTCCTGGGCTCTCAGCCTCCCTGACCCCTTCCACCCTGCTTCCTGATTTAACTAAGTTTAAGGGACTCCCATTCTAGGGAGGGCAGGGCCTCAGTTCTGGTGCTCCCCACTAGACCAGGGGTTCCCCTCCCCAATGCTGACCCTGATAACTTCATTCAGCAGCTGACAGGTTTTTCTGTCACCTGCTCTATGTCCATTAAGGGAAATGGACCTCAAAGAAGCTGCTTTCTCAGGGAGGGAGGGACATCCATGCCAAGGACCAGCATGGTCCAGACTGCACCCCTCACAGCCCCTCTTCCGGCCAG
Seq C2 exon
GCTTCCTGAGGAGATTTCCAGCATCCAGCCCCGACTGTTTGAGTGCTCCAGCCACTCGGGCCACCTGGTCCTCACGGAAGTGGTGTTCTTTGGCCAAGAGGACTTAGACAAGTATGACATCATGCTACTAGACACCTGTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.6=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGATGGCGCGGACAG
R:
TCCTGACAGGTGTCTAGTAGCA
Band lengths:
271-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]