DreINT0022376 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20280691-20282040:-
Coord C1 exon
chr24:20281895-20282040
Coord A exon
chr24:20280836-20281894
Coord C2 exon
chr24:20280691-20280835
Length
1059 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAA
5' ss Score
5.13
3' ss Seq
ATATCCATTGTCTCCATTAGACT
3' ss Score
5.51
Exon sequences
Seq C1 exon
GGCTGCAGTGGAGATGAGCGAGAGATGGGAAAAGCTGTGGCTGATCTGCTCTCTGGTCAGGATAAGCAGACTGTGATGGAGGGTCAGGAACCAGCTGCTTTCTGGGTGCCTCTGGGAGGAAAAGCTCCATACGCCAGTGACAAGAG
Seq A exon
GTACAATCCTAAAACCAAACAAAAAGCAACTCACACAGGACAGATGATCATTCTCACATTGCAATAAAATGCAATGTCTCATTTAAAGACTCGTTTCCAGTCCAATTATACAAACACATGTAAAATCAAGATGCATTTTCTAGACAAGTAAAAAAATTATTATTTTTTTATATAGAAATTACAACTCAAAATTAAGTGTTTTTCCTTTAAACAAGCAAATAATATGAATGAGGTGAGTAAAATAATCTTGTTTTTGGTTTGAAATAAGATCATTTTTAGACTCCTTATTTCTGAAAACAAGACCATATTTTTCACTTGCCTAGAAAACGCTTGTTTATTGAAGAATTTGTAGATATTTGGACAAGAATCAGGGGTGGATTAAGCCAATGAGTGAGGTAAACAGCCTCTCAGGGCCCTATGTCAAGAAGCCTATGTATATTAATCATAAAGCTCTTTTAAAAAATTTCTATCATATGTTGTAAAATCTCTCCATAACCATTAAGATTTTAAAGTAAGTTCTTCTATTCAAAATCGGGGGGCTTCGGCAAATAGTGGAATGTTCCGTCCGTACTGCACATACTAATATAATAATACTAATAATAAAATCTAATCACAAATATGGCTAATTAACTGTACATACTTTGTGAACTTGCTTTTTATTTGTGAATTTGCTGTATTTAATTTTACTTTAAGAAGATAAAGGTTCCACTTAAAATATATTTTTACATGCTGTTTATATTTACAAAAACAATAAAAAATCTACAGAGGAAAAAATATCTATAGAGAAAGAGAATATTTTGAGTTTCGATGTGAGGGCCCCATTCCTGGGATTGCTTAGGGACCCTAAATCCCTAAGCCCCTGACTAGAATCTAGACAAAACTCAAAGTAAGTAAAGCATTATTTACAGTAAATTTACATGCAATAATAAGTAAGTAACAGGTAATAATAAGTAAATAAAACAATCAGTCGTAGGTTAATAAAAATCTGCCGAAATTGTGTTCAGGCAGTTTGTGTGGGCCCACTGATGTCCATGTAAACATATCCATTGTCTCCATTAG
Seq C2 exon
ACTGGAGGAAGAGGTGTCACTTCATGAGCCCCGTCTGTTCGAGTGCTCCAATCAGACAGGTCGATTCCTCATGACAGAAGTGGCCGACTTTACTCAGGATGACCTGGATGAGGACGACGTCATGCTGCTCGACACCTGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.3=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGAGATGAGCGAGAGA
R:
CTCATCCCAGGTGTCGAGCAG
Band lengths:
287-1346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]