GgaINT0102138 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:4515848-4516795:+
Coord C1 exon
chr2:4515848-4515993
Coord A exon
chr2:4515994-4516635
Coord C2 exon
chr2:4516636-4516795
Length
642 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TTGCTTTTTTTTTTCCCCTGCCA
3' ss Score
0.65
Exon sequences
Seq C1 exon
GGCTGCAGCGGAGATGAGAGGGAGATGGCAAAGATGGTGGCTGACATTGTCTCCAGGAGGGACAAGCACACCATTTTGGAGGGACAGGAGCCAGCAGAGTTCTGGGAAGCCCTGGGAGGCAAAGCCCCTTATGCCAGTGAAAAGAG
Seq A exon
GTAATAGTAAGCTGATTGTTCCTCTGGGGTTGGACAGGCAACATTAAGTAAGGGATCAAACCCTTACAGAAGGATGGGTAAGCACTTTGTGTCAAACCAAGCTTTTGGGAGTATTCTGACCTATTGCTGCCTTTGGTGAGGATGTGGAAACAATCAGAAACCACACTAAGATGTTTCCTGTCTAGGTTTTGGGTCTTGGTTTGGATGGGTTTCCCCACAGTAAATCTGCCTCGTATCTTGTCATAAGGGCTACATGACCCACACAGTCCATTTCCATCCATTACTGGCCTTTTGAAATTGAATTGGCATTTGAATAACTCAAACTTCTCCAACCCTCTGAGCACAAAACGTGTTCCTCTGCAACCAAGTGATCAATGTGACTTCCACCTGACAGCAGCCTCCTGTGCACAAGGAAGGAAGCGTCCTGCTTTTGGCTTCTTTGGATGGAAATAGTGTTACCCTTAGGAATTGTTAAAATGCTCCAAGTATCTCATGCAAATCAGCGTGGCTGAGTTTCAGGCCCTCTGATGTGTGTTGTCATGTCCCCACCTCATCCAGCGTGGACATGAGTAGTAGTGGTAGGGCCTAATGCTAAACCACAAGGGAAGGATTTCCATCTCTCTTGCTTTTTTTTTTCCCCTG
Seq C2 exon
CCATGCACGAGGAAGGTTTCAAGAGCAGATCACACACTACCAACCTCGCCTCTTCGAGTGCTCCAACCAGACGGGTCGGTTCATCATGACAGAGGTGGTGGATTTCTGCCAGGAAGACTTGGATGAAGATGATGTCATGTTACTAGACACTTGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGATGAGAGGGAGATG
R:
TCCCAAGTGTCTAGTAACATGACA
Band lengths:
296-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]