BtaINT0159772 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11484616-11485252:+
Coord C1 exon
chr22:11484616-11484815
Coord A exon
chr22:11484816-11485173
Coord C2 exon
chr22:11485174-11485252
Length
358 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
TCTGCATGCCTGTCCCCTAGAGT
3' ss Score
7.95
Exon sequences
Seq C1 exon
GGCCTGTTCCTGACCCACAGCCTCCGGGACAGGGAGCGTGGCGGTCGTGCACAGGTCAGCGTGGTGGATGATGAGGCTGAAGCCACTGACCTCATGGAGATCATGGAAGCTGTGCTGGGCCGCAGAGTGGGCAGCCTGCACGCCGCCATGCCCAGCAAGAGGATGAATCAGCTGCAGAAGGCCAATGTCCACCTCTACCA
Seq A exon
GTGAGCAGGCCTTGGGAGTGGGCGTGTCCCAAGGGTGGGTGTGTCCATCATTACCGCAGTCACGTGGTGCCTCTAGGAAGGCCTCTAGGAAAGGCTCCTGGCTGTCTGGAGCAGGCCATAAGGCACCTTGGCCTCAGCCTGTACTCTAGCATGGCTGCCTTCCTGAGAAACTCATTGTACAGACAAGGCGACTGGGGCCCTGAAAAGGCCAGGGCACTGCCCAAGGCTTCATAGCAAGGCTGCGAAGAACCCAGCCCCCAAGCCTTCTGCTTCTGGAGGCAGGAGGGGCGGTGGCAGCTGGAGTGGAACCAGGCCAGGAAGGGGCTGAACTGCCTACATCTGCATGCCTGTCCCCTAG
Seq C2 exon
AGTCTGCCAGAAGAGCAAGGATCTGGTGGTCCAAGAGTTGTCGACCTGCCCATTGACCCAAGACCTGCTTCAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
NA
C2:
PF0062617=Gelsolin=PU(19.7=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCTGACCCACAGCCTC
R:
CTGAAGCAGGTCTTGGGTCAA
Band lengths:
270-628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]