HsaINT0180212 @ hg38
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37997483-37998168:+
Coord C1 exon
chr3:37997483-37997685
Coord A exon
chr3:37997686-37998089
Coord C2 exon
chr3:37998090-37998168
Length
404 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTGGGTTCCTGTCCCCCCAGTGT
3' ss Score
8.38
Exon sequences
Seq C1 exon
GGGCTGGCTTTGACCTACAGCCTCCGGGACAGGGAACGTGGTGGTGGTCGTGCACAGATTGGTGTGGTGGATGATGAGGCCAAAGCCCCGGACCTCATGCAGATCATGGAGGCTGTGCTGGGCCGCAGGGTGGGCAGCCTGCGTGCCGCCACGCCCAGCAAGGATATCAACCAGCTGCAGAAGGCCAATGTTCGCCTGTACCA
Seq A exon
GTGAGTACCCCTGGGGTGGGCAGGGGTGGGTGGGACAGTCCAGGACTCTGTGTCCATCACTACTGCAATAACACGGCATCTCTAGAAGGCCCTCCAGCAAAGGCTGCTGGGTTTCTGGGACAGGTCATGTGGACCGTGGGTCCAGCCTGTACTCTTCCATGGCATGTGGCTGCCTTGCTGAGAAACCTATTGTACATACAGGGGGACTGTGGCGCCCTGCCAGGGCCAGGGAGCTGCCTAAAGCTCCACAGCAAGGCTGCAGTAAAAGTGAAGACTACAACTCGGGGCCCCAGCCCCCATGCCTTCTGTCTCTGAGGGACTGGGGTGGGGTCCTAAATGGGGCTGGAGTGGAGACAGATCAGGGAGGGGCTGGGCTGGCCACTCCTGGGTTCCTGTCCCCCCAG
Seq C2 exon
TGTCTATGAGAAGGGCAAAGACCTGGTGGTCCTGGAGTTGGCGACCCCCCCACTGACCCAGGACCTGCTGCAGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059:ENST00000283713:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(41.6=47.1)
A:
NA
C2:
PF0062617=Gelsolin=PU(19.7=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTTTGACCTACAGCCTC
R:
CAGCAGGTCCTGGGTCAGT
Band lengths:
270-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains