RnoINT0162887 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127743615-127744241:+
Coord C1 exon
chr8:127743615-127743814
Coord A exon
chr8:127743815-127744162
Coord C2 exon
chr8:127744163-127744241
Length
348 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
TCTGCATACCTGCCCCACAGTGT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GCGCTGAGCCTGACTTGCAGCCTCAGAGACAGAGAGCGTGGTGGCCGTGCCCAGATCCGTGTGGTGGATGCTGAGAATAAAGCCACCGACCTCATGAGCATCATGGAGGCTGTGCTGGGCAGAAGATCGGGCAGCCTGTGTGCCTCTGTGCCCAGCAACAGTGTTAGCCAGCTGCAAAAGGCCAACATCCGTCTCTACCA
Seq A exon
GTGAGCAGGACTGGGGGAGGGCACAGGGAGAATGGGGGGGGGGTCACAGCTGTGCATCTGTCATTACTGAAATAACGAGTCCTCTACAAAAACTTCCAGTAAAAGCCCGTGGGTCTCTGGGGTAGGTCATGTGGGGTGTTGGGCCTGCATGATATGCACTCTTTGATGGCGGGTGTGAGAAAACCCATAGCAGAGATGGAGAGACTGAGGCCCCATGAGGAACCTCAAGCAAGGCTGCAGTAGCTGAGTTCCTATCACTAAGTCTCTGGAAAACTAGAGGAGGTCAGGGGTGCTGGGATGGCACCAGGCCAGGGAGAGACTGTCCACATCTGCATACCTGCCCCACAG
Seq C2 exon
TGTCTTCGAGAAGGGAACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTGCTGCAGGAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
NA
C2:
PF0062617=Gelsolin=PU(20.8=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCTGACTTGCAGCC
R:
CTGCAGCAGGTCCTGGGTC
Band lengths:
270-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]