GgaINT0102130 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:4509193-4509550:+
Coord C1 exon
chr2:4509193-4509392
Coord A exon
chr2:4509393-4509471
Coord C2 exon
chr2:4509472-4509550
Length
79 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TCGCTGGCTCTGTCTTTCAGTGT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GGCCTCGCACTGGCTCGTAGCATCAGGGACAGCGAAAGAGGCGGCCGCGCTCAAATCGGCATCATCGACAACGAGAAGGACTCCCCAGACCTCCTGAAGATCATGAAGATGGTGCTGGGTGAGAGGCGTGGGGAGCTCCGGGATGCCATCCCGGACACGAAAGCAGATGAGCTGCAGAAAGCAAACGTCCGGCTCTACCA
Seq A exon
GTGAGTGTGGGTCTGGGCTCCCACCTCTTGTCATGGCGGGTGCTGTGGGGCCTGACCACTCGCTGGCTCTGTCTTTCAG
Seq C2 exon
TGTCTACGAGAAGGACAACGACCTCGTGGTACAGGAGATAGCCACTCGGCCCCTGACACAAGACCTGCTCCAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
NA
C2:
PF0062617=Gelsolin=PU(20.8=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGATGGTGCTGGGTGAGA
R:
CTGGAGCAGGTCTTGTGTCAG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]