MmuINT0172952 @ mm10
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:119061895-119062520:+
Coord C1 exon
chr9:119061895-119062094
Coord A exon
chr9:119062095-119062441
Coord C2 exon
chr9:119062442-119062520
Length
347 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
TGGATACATGTCCCCCCCAGTGT
3' ss Score
5.04
Exon sequences
Seq C1 exon
GCTCTGACCCTGACTTGCAACCTCAGAGACAGGGAGCGAGGTGGCCGTGCCCAAATTGCTGTGGTAGATGCGGAGAATGAAGCCACCAACCTTCTGCGCATCATGGAGGCTGTGCTGGGCTGCAGATCAGGCAGCCTGTGTCCCTCTGTACCCAGCAACAGTGTTAGCCAGCTACAAAAGGCCAATGTCCGCCTCTACCA
Seq A exon
GTGAGCAGAACTGGGGGAGGGAGGGCACAGGGAGAGTGAGGGTCACAGCTATGTGTCTGTCCTTACTGAAATAACAGGTCCTCTACAAAAGCTTCCAGTAAAAGCCTGTGGGTCTCTGGGGTAGGTCATGTGCAGTGTTGGGCCTGCATGATATGCACTCTTGCATGGCATGTGGTAGCATTGATGAGAAAAACCCATAGCAGAGATGGGGAGACTGAGGCCCTGTGAAGAGCCACCTAAACCCCACTACCTAAGTCTCCAGGAGACTAGAGGAGGTCAGGGGCACTGGGATGGCACCAGGCCAAGGAGAGACTAGCCGTCCACATCTGGATACATGTCCCCCCCAG
Seq C2 exon
TGTCTGTGAGAAGGGGACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTCCTGCAAGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775:ENSMUST00000051386:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(40.8=46.3)
A:
NA
C2:
PF0062617=Gelsolin=PU(20.8=59.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGACTTGCAACCTCAG
R:
GAGGTCCTGGGTCAGTGGG
Band lengths:
262-609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types